TkA01G003020 | RubberDandelionOmics

Gene overview

TkA01G003020

Reference: TK1151 Chr: Chr01 Coordinates: 778317-780327 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1233 bp · TkA01G003020|TK1151|cDNA

TTTAATGGCTGCCTACGTTTTGTCCTTCCTCTTCTTCTTTTTCTTCACTGGCAAGTCAACAAATTCGACCTCTAGGCCCATGCGGAAGTGGGTGGGACCCTCCGGCCACCGTAACATCACCGTGGATGTCAAAGGGTGCGGTGACTACACCACGGTTCAGGAAGCAGTGGATTCAGTTTCAACAAATAACCGGAAAAATATCCTCATCCATATCTCAGCCGGTGTTTACGTAGAAAAGGTGGTGGTTCCGGCGAGTAAAC...

CDS

Download CDS FASTA

1023 bp · TkA01G003020|TK1151|CDS

ATGGCTGCCTACGTTTTGTCCTTCCTCTTCTTCTTTTTCTTCACTGGCAAGTCAACAAATTCGACCTCTAGGCCCATGCGGAAGTGGGTGGGACCCTCCGGCCACCGTAACATCACCGTGGATGTCAAAGGGTGCGGTGACTACACCACGGTTCAGGAAGCAGTGGATTCAGTTTCAACAAATAACCGGAAAAATATCCTCATCCATATCTCAGCCGGTGTTTACGTAGAAAAGGTGGTGGTTCCGGCGAGTAAACCGTA...

Protein

Download Protein FASTA

340 aa · TkA01G003020|TK1151|PROTEIN

MAAYVLSFLFFFFFTGKSTNSTSRPMRKWVGPSGHRNITVDVKGCGDYTTVQEAVDSVSTNNRKNILIHISAGVYVEKVVVPASKPYITFQGREGRETTVIEWHDRASDRGPDGQQLRTYQTASVIVYASYFSARNISFKNTAPAPMPGMHGWQAVAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIAKRFGSIAAHDRRRADDKSGFAFVGCNVTGTGPLYVGRAMGQYS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G003020`
TK1151 ID	TkA01G003020
OH-1004 ID	LXL04_005986
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G003020

Location Chr01:778317-780327 (+)

Description Similar to PME68: Probable pectinesterase 68

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g47500`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release
`At5g19730`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release
`At5g55590`	Pectinesterase required for cell type-specific pectin degradation to separate microspores.	Separation of Arabidopsis pollen tetrads is regulated by QUARTET1, a pectin methylesterase gene.2006 · DOI: 10.1104/pp.106.085274 Tetrad analysis possible in Arabidopsis with mutation of the QUARTET (QRT) genes.1994 · DOI: 10.1126/science.8197459 Tetrad pollen formation in quartet mutants of Arabidopsis thaliana is associated with persistence of pectic polysaccharides of the pollen mother cell wall.1998 · DOI: 10.1046/j.1365-313x.1998.00183.x
`At2g36710`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release
`At1g05310`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005986 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009408 response to heat Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010588 cotyledon vascular tissue pattern formation Biological Process

GO:0042545 cell wall modification Biological Process

GO:0045490 pectin catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0048046 apoplast Cellular Component

GO:0030599 pectinesterase activity Molecular Function

KEGG gene cross-reference

ath:AT1G05310

ath:AT2G36710

ath:AT5G19730

ath:AT5G47500

ath:AT5G55590

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.449

Rank 1 · TkA01G003020 · TK1151

Lysosome / Vacuole0.192

Rank 2 · TkA01G003020 · TK1151

Cell membrane0.121

Rank 3 · TkA01G003020 · TK1151

Cytoplasm0.106

Rank 4 · TkA01G003020 · TK1151

Endoplasmic reticulum0.093

Rank 5 · TkA01G003020 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01095Pectinesterase37-331 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G003020	`PF01095`	Pectinesterase	37	331	2.6e-59	201.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LPF3`	Arabidopsis thaliana	sp\|Q8LPF3\|PME68_ARATH Probable pectinesterase 68	79.000%	Swiss-Prot	High
`Q8VYZ3`	Arabidopsis thaliana	sp\|Q8VYZ3\|PME53_ARATH Probable pectinesterase 53	45.500%	Swiss-Prot	Medium
`Q9FM79`	Arabidopsis thaliana	sp\|Q9FM79\|PME62_ARATH Pectinesterase QRT1	49.200%	Swiss-Prot	Medium
`Q9ZQA3`	Arabidopsis thaliana	sp\|Q9ZQA3\|PME15_ARATH Probable pectinesterase 15	46.200%	Swiss-Prot	Medium
`O23038`	Arabidopsis thaliana	sp\|O23038\|PME8_ARATH Probable pectinesterase 8	44.500%	Swiss-Prot	Medium

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