TkA01G002770 | RubberDandelionOmics

Gene overview

TkA01G002770

Reference: TK1151 Chr: Chr01 Coordinates: 720827-723258 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1262 bp · TkA01G002770|TK1151|cDNA

TTTTGAAAGATAACAACAGGTTAAAAGGAAAACTAAAGGGGACAAATATGAAAATATTGGATTATCCCGCTTTATGCACCGATAAACAGAATTGATACTCATACGCTCACAGTAACAGAGTGATAAAGAGAAGAGAGAGACGAAGTAACAAACCACTCTTTACGCCTTTTACGGAAGTTATTTCTGCAAAAAAATTGGGTTCGATTTCTACAATATAAGCTGAGAATAAGCCATGAATCGGCGCGATGATCCGAATCCTT...

CDS

Download CDS FASTA

807 bp · TkA01G002770|TK1151|CDS

ATGAATCGGCGCGATGATCCGAATCCTTTTGATGACGAAGTCAATCCATTTTCGAATGGAGATGCTGCTCCTGGCTCAAAATCCCGTATTCCTCAAATGGTTGCTAGTACTCTTGGCTTTGGTCAAAAGCATGATGCAACTGTTGATATACCATTAGATTCAATGAATGATCCAAAGAAAAAAGAGAAACAACTTTCAAACTGGGAAGCCGACTTGATGAGAAAGGAAAAGGAGATCAAACGGAGAGAAGAAGTTGTTGC...

Protein

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268 aa · TkA01G002770|TK1151|PROTEIN

MNRRDDPNPFDDEVNPFSNGDAAPGSKSRIPQMVASTLGFGQKHDATVDIPLDSMNDPKKKEKQLSNWEADLMRKEKEIKRREEVVAGAAIPTDDRNWPPFFPIIHHDIANEIPVHAQKLQYLAFASWLGLVLCLVFNIIAVTVCWIKGGGVKIFFLAIIYALLGVPLSYVLWYRPLYRAMRTDSAMKFGWFFMFYLIHLGFCIFAAIAPPIVFEGRSLTGILAAVDVFSDHALAGIFYLLGFGLFCVELLLSFWVLQKV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G002770`
TK1151 ID	TkA01G002770
OH-1004 ID	LXL04_005994
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G002770

Location Chr01:720827-723258 (+)

Description Similar to SCAMP4: Secretory carrier-associated membrane protein 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g32050`	Probably involved in membrane trafficking.	No verified direct reference in this release
`At2g20840`	Probably involved in membrane trafficking.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: Q0JAI9`	Probably involved in membrane trafficking.	No verified direct reference in this release
`Os02g0697800`	Probably involved in membrane trafficking.	No verified direct reference in this release
`Os05g0503000`	Probably involved in membrane trafficking.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005994 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0015031 protein transport Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0030658 transport vesicle membrane Cellular Component

GO:0032588 trans-Golgi network membrane Cellular Component

GO:0055038 recycling endosome membrane Cellular Component

KEGG gene cross-reference

ath:AT1G32050

ath:AT1G61250

dosa:Os04g0595800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.354

Rank 1 · TkA01G002770 · TK1151

Golgi apparatus0.316

Rank 2 · TkA01G002770 · TK1151

Cell membrane0.299

Rank 3 · TkA01G002770 · TK1151

Lysosome / Vacuole0.182

Rank 4 · TkA01G002770 · TK1151

Endoplasmic reticulum0.162

Rank 5 · TkA01G002770 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29243Tp0577_N56-85 aa

PF04144SCAMP96-266 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G002770	`PF29243`	Tp0577_N	56	85	0.26	11.9
TkA01G002770	`PF04144`	SCAMP	96	266	3.3e-60	203.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C6X2`	Arabidopsis thaliana	sp\|Q9C6X2\|SCAM4_ARATH Secretory carrier-associated membrane protein 4	70.800%	Swiss-Prot	High
`Q9SKT3`	Arabidopsis thaliana	sp\|Q9SKT3\|SCAM1_ARATH Secretory carrier-associated membrane protein 1	55.600%	Swiss-Prot	High
`Q0JAI9`	Oryza sativa subsp. japonica	sp\|Q0JAI9\|SCAM6_ORYSJ Secretory carrier-associated membrane protein 6	63.300%	Swiss-Prot	High
`Q6Z8F5`	Oryza sativa subsp. japonica	sp\|Q6Z8F5\|SCAM5_ORYSJ Secretory carrier-associated membrane protein 5	60.400%	Swiss-Prot	High
`Q60EA5`	Oryza sativa subsp. japonica	sp\|Q60EA5\|SCAM3_ORYSJ Secretory carrier-associated membrane protein 3	54.300%	Swiss-Prot	High

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