TkA01G002690 | RubberDandelionOmics

Gene overview

TkA01G002690

Reference: TK1151 Chr: Chr01 Coordinates: 698713-700344 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

986 bp · TkA01G002690|TK1151|cDNA

AAACGAACAGAATCCAGCAAAAAGTCCACAAAGCTAAGCTACCATTTCCGTCGCTGTCCATCTATCCATACATCAGCACCCTTTATAAATCGTTGGCTCTGGGAGACACTGATACAAGTTGACAAAATCCCAGATCAGATTTGGAGCTCTTCGTTTCTACATTAAGCAAACAGAAGCTGAGCAACATGGTTAGCCTTTTCTCGAGGTTTTCTGTAAGCAGAAACGGCCATCGTCGTTCCCAGACTACACTTGATGAGAGG...

CDS

Download CDS FASTA

459 bp · TkA01G002690|TK1151|CDS

ATGGTTAGCCTTTTCTCGAGGTTTTCTGTAAGCAGAAACGGCCATCGTCGTTCCCAGACTACACTTGATGAGAGGGAAGTGTTACCCCCCCAAGATACAGAAATAACAGAGTCGTCGACAGTTGTTGGAGCAACGGATACAAGTCATCATGGAATCGAAGTGGTGGTTGAGTTTAAACCCGTTGACCACCCCACGGAGCCTCTTGACCATGATCAACCTGTTCACTGCCCCTTGCCCGAACCTTCAATTCTCAATGACGG...

Protein

Download Protein FASTA

152 aa · TkA01G002690|TK1151|PROTEIN

MVSLFSRFSVSRNGHRRSQTTLDEREVLPPQDTEITESSTVVGATDTSHHGIEVVVEFKPVDHPTEPLDHDQPVHCPLPEPSILNDGRIWKERVSAGVQKRTGELSIVQEAPEAEPHAAKPPRRPNRMILPSISAPEHNILKLLEECSASGI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G002690`
TK1151 ID	TkA01G002690
OH-1004 ID	LXL04_005996
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	90.800
Protein coverage (%)	TK1151 100.000 / OH-1004 21.263 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G002690`
Location	Chr01:698713-700344 (-)
Description	Similar to UEV1D: Ubiquitin-conjugating enzyme E2 variant 1D
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_005996` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000723 telomere maintenance Biological Process GO:0006281 DNA repair Biological Process GO:0006301 DNA damage tolerance Biological Process GO:0006310 DNA recombination Biological Process GO:0006974 DNA damage response Biological Process GO:0070534 protein K63-linked ubiquitination Biological Process GO:1902916 positive regulation of protein polyubiquitination Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005829 cytosol Cellular Component
KEGG gene cross-reference	ath:AT1G23260 ath:AT1G70660 ath:AT2G36060 ath:AT3G52560 xla:734585 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.544

Rank 1 · TkA01G002690 · TK1151

Nucleus0.287

Rank 2 · TkA01G002690 · TK1151

Cell membrane0.199

Rank 3 · TkA01G002690 · TK1151

Mitochondrion0.091

Rank 4 · TkA01G002690 · TK1151

Golgi apparatus0.066

Rank 5 · TkA01G002690 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09214Prd1-P26-127 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G002690	`PF09214`	Prd1-P2	6	127	0.0035	16.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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