TkA01G001060 | RubberDandelionOmics

Gene overview

TkA01G001060

Reference: TK1151 Chr: Chr01 Coordinates: 222812-224632 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1526 bp · TkA01G001060|TK1151|cDNA

ATACAACAAAATACATTTACAAATAAACCCGAACCCGACCCGTTTTGATACCTTATTAAACCCACTCGACCTGCCATTTGCCCACCGTGCTGCGTGACTGTTCATCTCTCATACTTGTTTATCATCCCCATCAGCTTCTCTAACCAAATTCCACACACAAAAAGATTTAGAAAAATCTAGAGAGAGAAAGAGTGTGTGTGTGTGTGTGTGTGTTTTCATGGGGAATTACAGGTTTAGATTATCAGATATGATACCAAATG...

CDS

Download CDS FASTA

1143 bp · TkA01G001060|TK1151|CDS

TTCATCTCTCATACTTGTTTATCATCCCCATCAGCTTCTCTAACCAAATTCCACACACAAAAAGATTTAGAAAAATCTAGAGAGAGAAAGAGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTGTTTTCATGGGGAATTACAGGTTTAGATTATCAGATATGATACCAAATGCTTGGTTTTACAAGCTTAGAGACATGAGCAAAACGAAGACCACCGCCAC...

Protein

Download Protein FASTA

380 aa · TkA01G001060|TK1151|PROTEIN

FISHTCLSSPSASLTKFHTQKDLEKSRERKSVCVCVCERERERERERERERERGVFMGNYRFRLSDMIPNAWFYKLRDMSKTKTTATSTTHNNKKPPSGSYYTAAPPPQNHHFSQPRSSFYYTPRVSQFHNSPNFPHFHDPPRKSSKKSRQANRKTVYKPSPKHQDFFHSPTTNTSPFSVHESPSSESAQSGLATATCCTCRVSSSTSDIVIDVNETRKIDNSIGYDLSPEIELKLPPIITKSAIARPSSRNTQTSHSGK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G001060`
TK1151 ID	TkA01G001060
OH-1004 ID	LXL04_015134
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	98.200
Protein coverage (%)	TK1151 44.474 / OH-1004 14.286 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G001060

Location Chr01:222812-224632 (+)

Description Similar to EXL3: GDSL esterase/lipase EXL3

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g06920`	Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors.	OVATE FAMILY PROTEIN4 (OFP4) interaction with KNAT7 regulates secondary cell wall formation in Arabidopsis thaliana.2011 · DOI: 10.1111/j.1365-313x.2011.04595.x Arabidopsis ovate family proteins, a novel transcriptional repressor family, control multiple aspects of plant growth and development.2011 · DOI: 10.1371/journal.pone.0023896
`At5g01840`	Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors.	A central role of Arabidopsis thaliana ovate family proteins in networking and subcellular localization of 3-aa loop extension homeodomain proteins.2005 · DOI: 10.1073/pnas.0501181102 Arabidopsis Ovate Family Protein 1 is a transcriptional repressor that suppresses cell elongation.2007 · DOI: 10.1111/j.1365-313x.2007.03096.x OVATE FAMILY PROTEIN4 (OFP4) interaction with KNAT7 regulates secondary cell wall formation in Arabidopsis thaliana.2011 · DOI: 10.1111/j.1365-313x.2011.04595.x Arabidopsis ovate family proteins, a novel transcriptional repressor family, control multiple aspects of plant growth and development.2011 · DOI: 10.1371/journal.pone.0023896
`At5g58360`	Transcriptional repressor that may regulate multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors.	No verified direct reference in this release
`At2g30400`	Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors.	No verified direct reference in this release
`At4g18830`	Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors.	A central role of Arabidopsis thaliana ovate family proteins in networking and subcellular localization of 3-aa loop extension homeodomain proteins.2005 · DOI: 10.1073/pnas.0501181102 Cell-fate switch of synergid to egg cell in Arabidopsis eostre mutant embryo sacs arises from misexpression of the BEL1-like homeodomain gene BLH1.2007 · DOI: 10.1105/tpc.107.054890 Arabidopsis ovate family proteins, a novel transcriptional repressor family, control multiple aspects of plant growth and development.2011 · DOI: 10.1371/journal.pone.0023896

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015134 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0016298 lipase activity Molecular Function

GO:0016746 acyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G75880

ath:AT1G75900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.481

Rank 1 · TkA01G001060 · TK1151

Nucleus0.349

Rank 2 · TkA01G001060 · TK1151

Cell membrane0.280

Rank 3 · TkA01G001060 · TK1151

Endoplasmic reticulum0.059

Rank 4 · TkA01G001060 · TK1151

Plastid0.029

Rank 5 · TkA01G001060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13724DNA_binding_217-38 aa

PF13054DUF391527-54 aa

PF13724DNA_binding_257-96 aa

PF13724DNA_binding_2145-153 aa

PF13724DNA_binding_2249-258 aa

PF04844Ovate312-355 aa

PF21698Spo16_C323-350 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G001060	`PF13724`	DNA_binding_2	17	38	6.5e-20	71.9
TkA01G001060	`PF13054`	DUF3915	27	54	0.54	10.9
TkA01G001060	`PF13724`	DNA_binding_2	57	96	6.5e-20	71.9
TkA01G001060	`PF13724`	DNA_binding_2	145	153	6.5e-20	71.9
TkA01G001060	`PF13724`	DNA_binding_2	249	258	6.5e-20	71.9
TkA01G001060	`PF04844`	Ovate	312	355	1e-18	67.8
TkA01G001060	`PF21698`	Spo16_C	323	350	0.029	14.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4HNU8`	Arabidopsis thaliana	sp\|F4HNU8\|OFP4_ARATH Transcription repressor OFP4	32.000%	Swiss-Prot	Medium
`Q9LZW2`	Arabidopsis thaliana	sp\|Q9LZW2\|OFP1_ARATH Transcription repressor OFP1	41.200%	Swiss-Prot	Medium
`Q9LVL4`	Arabidopsis thaliana	sp\|Q9LVL4\|OFP3_ARATH Transcription repressor OFP3	35.500%	Swiss-Prot	Medium
`O04351`	Arabidopsis thaliana	sp\|O04351\|OFP2_ARATH Transcription repressor OFP2	34.500%	Swiss-Prot	Medium
`Q8VZN1`	Arabidopsis thaliana	sp\|Q8VZN1\|OFP5_ARATH Transcription repressor OFP5	60.700%	Swiss-Prot	Low

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