TkA01G000350 | RubberDandelionOmics

Gene overview

TkA01G000350

Reference: TK1151 Chr: Chr01 Coordinates: 85257-85973 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

501 bp · TkA01G000350|TK1151|cDNA

ATGAACATATGGTCATTTAATCCTTGTGCTTACTCCTTTATGAGTGAGCGAGACCGGTTTACCTTTCATGGGGTGTCAGATTTTATGGACCCAAATTTCAAGACCAGGACCAAGGCTACTGTTCCGATGTTGGTGGATTGGGTGATCGGAAACTTGAGTTGCATCGAGGCTAGAAATTCCCGAGTCTTGACTTGCCAAGCTAATAGTTATTGTATCGATTCTGATACTGGAGTTCCAGGATACAGATGCAGTTGCAATCA...

CDS

Download CDS FASTA

501 bp · TkA01G000350|TK1151|CDS

ATGAACATATGGTCATTTAATCCTTGTGCTTACTCCTTTATGAGTGAGCGAGACCGGTTTACCTTTCATGGGGTGTCAGATTTTATGGACCCAAATTTCAAGACCAGGACCAAGGCTACTGTTCCGATGTTGGTGGATTGGGTGATCGGAAACTTGAGTTGCATCGAGGCTAGAAATTCCCGAGTCTTGACTTGCCAAGCTAATAGTTATTGTATCGATTCTGATACTGGAGTTCCAGGATACAGATGCAGTTGCAATCA...

Protein

Download Protein FASTA

166 aa · TkA01G000350|TK1151|PROTEIN

MNIWSFNPCAYSFMSERDRFTFHGVSDFMDPNFKTRTKATVPMLVDWVIGNLSCIEARNSRVLTCQANSYCIDSDTGVPGYRCSCNQGYQGQPYIDPDCHDINECEDPNTNLCEGICTNTAGGYSCSCPHGYTGDGFSNGRGCVVESSQFPVIKFTIVVTSVYYTG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G000350`
TK1151 ID	TkA01G000350
OH-1004 ID	LXL04_019143
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	95.500
Protein coverage (%)	TK1151 94.578 / OH-1004 9.033 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G000350

Location Chr01:85257-85973 (-)

Description Similar to WAK2: Wall-associated receptor kinase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g21210`	Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.	Antisense expression of a cell wall-associated protein kinase, WAK4, inhibits cell elongation and alters morphology.2001 · DOI: 10.1105/tpc.13.6.1317

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019143 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007166 cell surface receptor signaling pathway Biological Process

GO:0009311 oligosaccharide metabolic process Biological Process

GO:0009615 response to virus Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0009992 intracellular water homeostasis Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G21240

ath:AT1G21250

ath:AT1G21270

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.434

Rank 1 · TkA01G000350 · TK1151

Cell membrane0.272

Rank 2 · TkA01G000350 · TK1151

Cytoplasm0.107

Rank 3 · TkA01G000350 · TK1151

Endoplasmic reticulum0.085

Rank 4 · TkA01G000350 · TK1151

Lysosome / Vacuole0.045

Rank 5 · TkA01G000350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07974EGF_263-91 aa

PF07645EGF_CA64-90 aa

PF00008EGF64-91 aa

PF12947EGF_364-91 aa

PF06247Plasmod_Pvs2864-89 aa

PF12946EGF_MSP1_164-90 aa

PF14670FXa_inhibition65-92 aa

PF27506EGF_ATRAID_C65-91 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G000350	`PF07974`	EGF_2	63	91	0.0053	17.8
TkA01G000350	`PF07645`	EGF_CA	64	90	8e-10	39.5
TkA01G000350	`PF00008`	EGF	64	91	7.6e-08	33.2
TkA01G000350	`PF12947`	EGF_3	64	91	2e-07	31.8
TkA01G000350	`PF06247`	Plasmod_Pvs28	64	89	0.038	14.8
TkA01G000350	`PF12946`	EGF_MSP1_1	64	90	0.18	12.5
TkA01G000350	`PF14670`	FXa_inhibition	65	92	1e-09	39.1
TkA01G000350	`PF27506`	EGF_ATRAID_C	65	91	1.7	9.4
TkA01G000350	`PF12661`	hEGF	75	89	0.0021	19.1
TkA01G000350	`PF12662`	cEGF	80	104	2.1e-08	34.6
TkA01G000350	`PF12947`	EGF_3	98	107	2e-07	31.8
TkA01G000350	`PF07645`	EGF_CA	101	133	8e-10	39.5
TkA01G000350	`PF14670`	FXa_inhibition	105	143	1e-09	39.1
TkA01G000350	`PF00008`	EGF	105	135	7.6e-08	33.2
TkA01G000350	`PF12661`	hEGF	105	113	0.0021	19.1
TkA01G000350	`PF07974`	EGF_2	105	135	0.0053	17.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LMN6`	Arabidopsis thaliana	sp\|Q9LMN6\|WAK4_ARATH Wall-associated receptor kinase 4	30.300%	Swiss-Prot	Medium

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