LXL04_040109 | RubberDandelionOmics

Gene overview

LXL04_040109

Reference: OH-1004 Chr: JAJTUU010000305.1 Coordinates: 4127-4933 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

606 bp · LXL04_040109|LXL04_040109|OH1004|cDNA

ATGGCCCAAGAACACGCTCATTCTTCAGCCGTAGAGAGACTTTTGAATTGCGAGGTACCATTACGAGCTCAATATATACGAGTGTTATTCCGTGAAATAACTCGAATTTCAAATCATTCACTTGCTTTAACTACTCATGCTATGGATGTGGGAGCATCAACTCCGTTCCTGTGGGCTTTTGAGGAGCGGGAAAAATTGTTGGAATTCTATGAAAGAGTCTCGGGAGCCAGGATGCATGCCAGTTTCATACGACCAGGTGG...

CDS

Download CDS FASTA

606 bp · LXL04_040109|LXL04_040109|OH1004|CDS

ATGGCCCAAGAACACGCTCATTCTTCAGCCGTAGAGAGACTTTTGAATTGCGAGGTACCATTACGAGCTCAATATATACGAGTGTTATTCCGTGAAATAACTCGAATTTCAAATCATTCACTTGCTTTAACTACTCATGCTATGGATGTGGGAGCATCAACTCCGTTCCTGTGGGCTTTTGAGGAGCGGGAAAAATTGTTGGAATTCTATGAAAGAGTCTCGGGAGCCAGGATGCATGCCAGTTTCATACGACCAGGTGG...

Protein

Download Protein FASTA

201 aa · LXL04_040109|LXL04_040109|OH1004|PROTEIN

MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGASTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSSTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRAQSNITVLGGVGRPPSNGVGPTDCERIRLWPLGTSEPHEFTGVEHGPPKSA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_040109`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_040109

Location JAJTUU010000305.1:4127-4933 (+)

Description Similar to NAD7: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`AtMg00510`	Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_040109 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006120 mitochondrial electron transport, NADH to ubiquinone Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0045271 respiratory chain complex I Cellular Component

GO:0008137 NADH dehydrogenase (ubiquinone) activity Molecular Function

GO:0016651 oxidoreductase activity, acting on NAD(P)H Molecular Function

GO:0046872 metal ion binding Molecular Function

GO:0048038 quinone binding Molecular Function

GO:0051287 NAD binding Molecular Function

GO:0051539 4 iron, 4 sulfur cluster binding Molecular Function

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.686

Rank 1 · LXL04_040109 · OH-1004

Cytoplasm0.158

Rank 2 · LXL04_040109 · OH-1004

Nucleus0.065

Rank 3 · LXL04_040109 · OH-1004

Peroxisome0.059

Rank 4 · LXL04_040109 · OH-1004

Plastid0.046

Rank 5 · LXL04_040109 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00346.25Complex1_49kDa49-151 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_040109	`PF00346.25`	Complex1_49kDa	49	151	9.5e-38	130.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P93306`	Arabidopsis thaliana	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2	94.000%	Swiss-Prot	strong database homology

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