LXL04_039767 | RubberDandelionOmics

Gene overview

LXL04_039767

Reference: OH-1004 Chr: JAJTUU010000039.1 Coordinates: 89151-104798 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

6885 bp · LXL04_039767|LXL04_039767|OH1004|cDNA

ATGGAAGAAGATCTGGTTCTAATTGATATCTTCCTTCCTGTTTGTGTTGGTGGATTCCTTTGGATCTTTGCTGCACTGGATGAAGACTGTGACCTAGCCCGCTTGGATATGAGATCTGCTATCTCTCATCCTAACCTCACGATTGTGAGCCGTACAACGAAATCTAACAGTCATTCTGGTTCTGAGATCTGTTATCTCTCATTCCAACCTCACAAAAGTGAGCCGAACAACAAAACCTCACTACACAAAGGCACCCTGTC...

CDS

Download CDS FASTA

6885 bp · LXL04_039767|LXL04_039767|OH1004|CDS

ATGGAAGAAGATCTGGTTCTAATTGATATCTTCCTTCCTGTTTGTGTTGGTGGATTCCTTTGGATCTTTGCTGCACTGGATGAAGACTGTGACCTAGCCCGCTTGGATATGAGATCTGCTATCTCTCATCCTAACCTCACGATTGTGAGCCGTACAACGAAATCTAACAGTCATTCTGGTTCTGAGATCTGTTATCTCTCATTCCAACCTCACAAAAGTGAGCCGAACAACAAAACCTCACTACACAAAGGCACCCTGTC...

Protein

Download Protein FASTA

2294 aa · LXL04_039767|LXL04_039767|OH1004|PROTEIN

MEEDLVLIDIFLPVCVGGFLWIFAALDEDCDLARLDMRSAISHPNLTIVSRTTKSNSHSGSEICYLSFQPHKSEPNNKTSLHKGTLSEQQTVLLPLLTILHPSPEVLVFTAFLVCYLLLHAFLVSFNFKLQGTVNYKAWSSATELGLRAHNKLGYVTGTFPRPTDDESKINQWDRADAVVLSWLLASVSENLYASHVLAKTSNEVWNDLKETYQKLDGSVVYNVYQKINSCSQNAKCTCNASATFITHTQQIKLMQFLMG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_039767`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_039767

Location JAJTUU010000039.1:89151-104798 (-)

Description Similar to At1g53430: Probable LRR receptor-like serine/threonine-protein kinase At1g53430

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g53430`	Probable LRR receptor-like serine/threonine-protein kinase At1g53430.	No verified direct reference in this release
`At1g53440`	Probable LRR receptor-like serine/threonine-protein kinase At1g53440.	No verified direct reference in this release
`At3g14840`	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840.	No verified direct reference in this release
`At1g07650`	Probable LRR receptor-like serine/threonine-protein kinase At1g07650.	No verified direct reference in this release
`At1g53420`	Probable LRR receptor-like serine/threonine-protein kinase At1g53420.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_039767 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009861 jasmonic acid and ethylene-dependent systemic resistance Biological Process

GO:0031667 response to nutrient levels Biological Process

GO:0045088 regulation of innate immune response Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0016020 membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G07650

ath:AT1G53420

ath:AT1G53430

ath:AT1G53440

ath:AT3G14840

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.271

Rank 1 · LXL04_039767 · OH-1004

Cytoplasm0.271

Rank 2 · LXL04_039767 · OH-1004

Endoplasmic reticulum0.194

Rank 3 · LXL04_039767 · OH-1004

Nucleus0.169

Rank 4 · LXL04_039767 · OH-1004

Lysosome / Vacuole0.091

Rank 5 · LXL04_039767 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14223.15Retrotran_gag_2147-216 aa

PF13976.12gag_pre-integrs510-560 aa

PF07727.20RVT_2772-1013 aa

PF23598.2LRR_141346-1443 aa

PF23598.2LRR_141385-1466 aa

PF23598.2LRR_141431-1539 aa

PF11721.15Malectin1688-1866 aa

PF00069.32Pkinase1940-2142 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_039767	`PF14223.15`	Retrotran_gag_2	147	216	7.1e-06	26.6
LXL04_039767	`PF13976.12`	gag_pre-integrs	510	560	6.6e-08	32.9
LXL04_039767	`PF07727.20`	RVT_2	772	1013	6.2e-74	249.4
LXL04_039767	`PF23598.2`	LRR_14	1346	1443	5.8e-14	52.3
LXL04_039767	`PF23598.2`	LRR_14	1385	1466	5.8e-14	52.3
LXL04_039767	`PF23598.2`	LRR_14	1431	1539	5.8e-14	52.3
LXL04_039767	`PF11721.15`	Malectin	1688	1866	1.1e-35	123.7
LXL04_039767	`PF00069.32`	Pkinase	1940	2142	7.2e-46	157.4
LXL04_039767	`PF07714.24`	PK_Tyr_Ser-Thr	1941	2159	1.6e-48	166.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`C0LGG8`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	58.201%	Swiss-Prot	weak database homology
`C0LGG9`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g53440	57.793%	Swiss-Prot	weak database homology
`C0LGN2`	Arabidopsis thaliana	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840	50.511%	Swiss-Prot	weak database homology
`C0LGE0`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	47.637%	Swiss-Prot	weak database homology
`C0LGG7`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g53420	51.119%	Swiss-Prot	weak database homology

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