LXL04_039641 | RubberDandelionOmics

Gene overview

LXL04_039641

Reference: OH-1004 Chr: JAJTUU010000020.1 Coordinates: 424832-428131 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1206 bp · LXL04_039641|LXL04_039641|OH1004|cDNA

ATGGCGACGAAGAAGAGTGTAAGCAGCTTGAAGGAAGCAGATCTGAAGGGGAAGAAGGTGCTTATCAGGGCTGATCTTAATGTACCGTTGGATGACAGTTTTAAGATCACCGATGACACACGTATCCGTGCCGCTGTCCCGACCATCAAATACTTGATGTCTAACGGCGCTAGAGTCATCCTATCTTCTCATTTGGGACGTCCAAAGGGTGTTACACCGAAATACAGCCTGAAGCCACTTGTGCCCAGACTTTCTGAGCT...

CDS

Download CDS FASTA

1206 bp · LXL04_039641|LXL04_039641|OH1004|CDS

ATGGCGACGAAGAAGAGTGTAAGCAGCTTGAAGGAAGCAGATCTGAAGGGGAAGAAGGTGCTTATCAGGGCTGATCTTAATGTACCGTTGGATGACAGTTTTAAGATCACCGATGACACACGTATCCGTGCCGCTGTCCCGACCATCAAATACTTGATGTCTAACGGCGCTAGAGTCATCCTATCTTCTCATTTGGGACGTCCAAAGGGTGTTACACCGAAATACAGCCTGAAGCCACTTGTGCCCAGACTTTCTGAGCT...

Protein

Download Protein FASTA

401 aa · LXL04_039641|LXL04_039641|OH1004|PROTEIN

MATKKSVSSLKEADLKGKKVLIRADLNVPLDDSFKITDDTRIRAAVPTIKYLMSNGARVILSSHLGRPKGVTPKYSLKPLVPRLSELLGLEVKMASDCIGPEVEKLVAELPEGGVLLLENVRFYKEEEKNDPEFAKKLASIADLYVNDAFGTAHRAHASTEGVTKYLKPAVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSSKIGVIESLLEKVNILVLGGGMIFTFYKAQGLKVGSSLVEEDKLDLATSLLEKAKA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_039641`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_039641

Location JAJTUU010000020.1:424832-428131 (-)

Description Similar to Phosphoglycerate kinase, cytosolic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g79550`	Phosphoglycerate kinase 3, cytosolic.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_039641 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002237 response to molecule of bacterial origin Biological Process

GO:0006094 gluconeogenesis Biological Process

GO:0006096 glycolytic process Biological Process

GO:0009408 response to heat Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009749 response to glucose Biological Process

GO:0019253 reductive pentose-phosphate cycle Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT1G79550

nta:107787830

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.740

Rank 1 · LXL04_039641 · OH-1004

Nucleus0.239

Rank 2 · LXL04_039641 · OH-1004

Mitochondrion0.189

Rank 3 · LXL04_039641 · OH-1004

Cell membrane0.142

Rank 4 · LXL04_039641 · OH-1004

Endoplasmic reticulum0.094

Rank 5 · LXL04_039641 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00162.25PGK10-390 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_039641	`PF00162.25`	PGK	10	390	5.7e-169	562.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SAJ4`	Arabidopsis thaliana	Phosphoglycerate kinase 3, cytosolic	87.032%	Swiss-Prot	strong database homology

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