Gene Card
Gene overview
cDNA / CDS / Protein Sequences
735 bp · LXL04_039549|LXL04_039549|OH1004|cDNA
ATGGAACACGAAGATGTTATGGAGGATGCTAGTGTTACTGCAAACGATCATGTGGATGTGTATGTGGATGAGGAGGTTAATGATGAAGACAGTGATGATTCAATTGAAGAAATTGATCCAGATTCACAAGGAGTTGAAAGCACTTCTACAAAGAAAAGGAAAACTAGGACACTAAAATCGGAGGTTTGGCAATGGTTTACCATCATAAAAAAGAAACCAAACGATACCGGACCCCAACTGTGTGTGTGCAACAAATGTGG...
735 bp · LXL04_039549|LXL04_039549|OH1004|CDS
ATGGAACACGAAGATGTTATGGAGGATGCTAGTGTTACTGCAAACGATCATGTGGATGTGTATGTGGATGAGGAGGTTAATGATGAAGACAGTGATGATTCAATTGAAGAAATTGATCCAGATTCACAAGGAGTTGAAAGCACTTCTACAAAGAAAAGGAAAACTAGGACACTAAAATCGGAGGTTTGGCAATGGTTTACCATCATAAAAAAGAAACCAAACGATACCGGACCCCAACTGTGTGTGTGCAACAAATGTGG...
Protein
Download Protein FASTA244 aa · LXL04_039549|LXL04_039549|OH1004|PROTEIN
MEHEDVMEDASVTANDHVDVYVDEEVNDEDSDDSIEEIDPDSQGVESTSTKKRKTRTLKSEVWQWFTIIKKKPNDTGPQLCVCNKCGQQYKAGSDQGTGNLKRHHKKCEKENTRDIGQYMIASNSGSIDMRNPKFSQAKFRELLIEGVVRHDLPFSFVEYEGMRKVWKYLESNTSNICRNTVKADIQKLYETQWSRLLGGRILNAYRSSMTSDTVEVIVCPRDWLFGENAYQVIMKKISVLEKN
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_039549 |
|---|---|
| TK1151 ID | TkA01G527860 |
| OH-1004 ID | LXL04_039549 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 95.800 |
| Protein coverage (%) | TK1151 86.957 / OH-1004 49.180Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_039549 | ||||||
|---|---|---|---|---|---|---|---|
| Location | JAJTUU010000013.1:714463-715454 (+) | ||||||
| Description | Protein of unknown function | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. Rice
| ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0009791 post-embryonic development Biological Process GO:0005634 nucleus Cellular Component GO:0003677 DNA binding Molecular Function GO:0008270 zinc ion binding Molecular Function GO:0046983 protein dimerization activity Molecular Function | ||||||
| KEGG gene cross-reference | dosa:Os05g0583200 osa:4339741 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q75HY5 | Oryza sativa subsp. japonica | Zinc finger BED domain-containing protein RICESLEEPER 3 | 27.094% | Swiss-Prot | weak database homology |