LXL04_039344 | RubberDandelionOmics

Gene overview

LXL04_039344

Reference: OH-1004 Chr: JAJTUU010000010.1 Coordinates: 3583679-3584638 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

864 bp · LXL04_039344|LXL04_039344|OH1004|cDNA

ATGAATTGGAACCACTTGCTACTATTTCTCTATGTTGCAATGTTGATTGAGTACGCATTTGTGTTTGCGGATACAGATATAGATACAAATACAGATGTAGATATTGGATATGGTGTTGTTAATCGTGATGATTTACCATTGCCACCTGTCGATCCACTTACTCCGATTTTACCCGAGTCTTATTGCTCGAATCCTCCTGGTTTGTCTATCTCACCACCTTCCACCACCATAGGGCCGCCCGCTAGCGAATATTACCCACC...

CDS

Download CDS FASTA

864 bp · LXL04_039344|LXL04_039344|OH1004|CDS

ATGAATTGGAACCACTTGCTACTATTTCTCTATGTTGCAATGTTGATTGAGTACGCATTTGTGTTTGCGGATACAGATATAGATACAAATACAGATGTAGATATTGGATATGGTGTTGTTAATCGTGATGATTTACCATTGCCACCTGTCGATCCACTTACTCCGATTTTACCCGAGTCTTATTGCTCGAATCCTCCTGGTTTGTCTATCTCACCACCTTCCACCACCATAGGGCCGCCCGCTAGCGAATATTACCCACC...

Protein

Download Protein FASTA

287 aa · LXL04_039344|LXL04_039344|OH1004|PROTEIN

MNWNHLLLFLYVAMLIEYAFVFADTDIDTNTDVDIGYGVVNRDDLPLPPVDPLTPILPESYCSNPPGLSISPPSTTIGPPASEYYPPSPPASGSYTPSPPATSSSSYPTTPTPPFSFSTPYTPPTTTTTTTTPGSPAIYEPTPTLNPPSGSGSGSGELSPPTFAFPSPTGIIPAPPLFEPPIVYPPPTQSPPVHSPGSALWCVAKPSVPDPIIQEAMNYACGSGADCESLQPNGECFKPDTLFAHASYAFNSYWQRTKVA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_039344`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_039344

Location JAJTUU010000010.1:3583679-3584638 (+)

Description Similar to PDCB2: PLASMODESMATA CALLOSE-BINDING PROTEIN 2

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g13560`	Glucan endo-1,3-beta-glucosidase 4.	No verified direct reference in this release
`At5g08000`	Able to bind (1->3)-beta-D-glucans (laminarin).	An Arabidopsis GPI-anchor plasmodesmal neck protein with callose binding activity and potential to regulate cell-to-cell trafficking.2009 · DOI: 10.1105/tpc.108.060145
`At5g61130`	Able to bind (1->3)-beta-D-glucans (laminarin).	An Arabidopsis GPI-anchor plasmodesmal neck protein with callose binding activity and potential to regulate cell-to-cell trafficking.2009 · DOI: 10.1105/tpc.108.060145
`At5g56590`	Glucan endo-1,3-beta-glucosidase 13.	No verified direct reference in this release
`At1g18650`	PLASMODESMATA CALLOSE-BINDING PROTEIN 3.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_039344 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0006952 defense response Biological Process

GO:0009408 response to heat Biological Process

GO:0052543 callose deposition in cell wall Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009536 plastid Cellular Component

KEGG gene cross-reference

ath:AT1G18650

ath:AT3G13560

ath:AT5G08000

ath:AT5G56590

ath:AT5G61130

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.519

Rank 1 · LXL04_039344 · OH-1004

Endoplasmic reticulum0.224

Rank 2 · LXL04_039344 · OH-1004

Cell membrane0.103

Rank 3 · LXL04_039344 · OH-1004

Cytoplasm0.101

Rank 4 · LXL04_039344 · OH-1004

Nucleus0.046

Rank 5 · LXL04_039344 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07983.19X8200-271 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_039344	`PF07983.19`	X8	200	271	2.6e-22	80.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94CD8`	Arabidopsis thaliana	Glucan endo-1,3-beta-glucosidase 4	46.067%	Swiss-Prot	weak database homology
`Q9SD84`	Arabidopsis thaliana	PLASMODESMATA CALLOSE-BINDING PROTEIN 2	49.425%	Swiss-Prot	weak database homology
`Q9FNQ2`	Arabidopsis thaliana	PLASMODESMATA CALLOSE-BINDING PROTEIN 1	44.828%	Swiss-Prot	weak database homology
`Q9FJU9`	Arabidopsis thaliana	Glucan endo-1,3-beta-glucosidase 13	44.186%	Swiss-Prot	weak database homology
`Q9FZ86`	Arabidopsis thaliana	PLASMODESMATA CALLOSE-BINDING PROTEIN 3	43.956%	Swiss-Prot	weak database homology

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