LXL04_039317 | RubberDandelionOmics

Gene overview

LXL04_039317

Reference: OH-1004 Chr: JAJTUU010000010.1 Coordinates: 2370794-2372631 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

774 bp · LXL04_039317|LXL04_039317|OH1004|cDNA

ATGACAAATTTGTCTTTTACTTATATCTTTTGTACAAATTTTACACCTACTGTGAGCAACAATCCACCTcccaacaacaacaataataacACTGGTTTAATTGTCTGGATTTTAGTTCCGATTGCAGTTGTGGTTCTTTTGGCATTATTAGCTCTGTATATTCTTCATCGGCGAAGGAAAAGGAGGGATACATCTCAAAATTACGATGAAGAGTTTTGGGGAATTGACACGAAGCCGTATACGTTTGGTTATGGAGATTT...

CDS

Download CDS FASTA

774 bp · LXL04_039317|LXL04_039317|OH1004|CDS

ATGACAAATTTGTCTTTTACTTATATCTTTTGTACAAATTTTACACCTACTGTGAGCAACAATCCACCTCCCAACAACAACAATAATAACACTGGTTTAATTGTCTGGATTTTAGTTCCGATTGCAGTTGTGGTTCTTTTGGCATTATTAGCTCTGTATATTCTTCATCGGCGAAGGAAAAGGAGGGATACATCTCAAAATTACGATGAAGAGTTTTGGGGAATTGACACGAAGCCGTATACGTTTGGTTATGGAGATTT...

Protein

Download Protein FASTA

257 aa · LXL04_039317|LXL04_039317|OH1004|PROTEIN

MTNLSFTYIFCTNFTPTVSNNPPPNNNNNNTGLIVWILVPIAVVVLLALLALYILHRRRKRRDTSQNYDEEFWGIDTKPYTFGYGDLRDATNDFSLENKLGEGGFGPLYKGTLEDGRVIAVKQLSVASHQGKSQFVAEIATISAVQHRNLVKLYGCCIDGEKRLLVYEYLEKKSLDQAIFSKKLSLTWATRFEICMGIARGISYLHEESRIRIIHRDVKASNVLIDPDMNPKISDFGLVKLYDDKKTHMSTRVAGTM

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_039317`
TK1151 ID	TkA04G237190
OH-1004 ID	LXL04_039317
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.400
Protein coverage (%)	TK1151 100.000 / OH-1004 71.595 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_039317

Location JAJTUU010000010.1:2370794-2372631 (-)

Description Similar to At1g56140: Probable LRR receptor-like serine/threonine-protein kinase At1g56140

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g56140`	Probable LRR receptor-like serine/threonine-protein kinase At1g56140.	No verified direct reference in this release
`At1g56130`	Probable LRR receptor-like serine/threonine-protein kinase At1g56130.	No verified direct reference in this release
`At1g53430`	Probable LRR receptor-like serine/threonine-protein kinase At1g53430.	No verified direct reference in this release
`At1g53440`	Probable LRR receptor-like serine/threonine-protein kinase At1g53440.	No verified direct reference in this release
`At1g07650`	Probable LRR receptor-like serine/threonine-protein kinase At1g07650.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_039317 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0031667 response to nutrient levels Biological Process

GO:0045088 regulation of innate immune response Biological Process

GO:0052542 defense response by callose deposition Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0033612 receptor serine/threonine kinase binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G07650

ath:AT1G53430

ath:AT1G53440

ath:AT1G56130

ath:AT1G56140

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.846

Rank 1 · LXL04_039317 · OH-1004

Cytoplasm0.094

Rank 2 · LXL04_039317 · OH-1004

Endoplasmic reticulum0.083

Rank 3 · LXL04_039317 · OH-1004

Nucleus0.052

Rank 4 · LXL04_039317 · OH-1004

Lysosome / Vacuole0.030

Rank 5 · LXL04_039317 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714.24PK_Tyr_Ser-Thr95-248 aa

PF00069.32Pkinase95-252 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_039317	`PF07714.24`	PK_Tyr_Ser-Thr	95	248	9.7e-35	120.8
LXL04_039317	`PF00069.32`	Pkinase	95	252	1.4e-33	117.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`C0LGH3`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g56140	61.789%	Swiss-Prot	strong database homology
`C0LGH2`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g56130	61.382%	Swiss-Prot	strong database homology
`C0LGG8`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	55.455%	Swiss-Prot	strong database homology
`C0LGG9`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g53440	53.275%	Swiss-Prot	strong database homology
`C0LGE0`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	51.092%	Swiss-Prot	strong database homology

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