LXL04_039196 | RubberDandelionOmics

Gene overview

LXL04_039196

Reference: OH-1004 Chr: Chr09 Coordinates: 62056370-62056955 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

318 bp · LXL04_039196|LXL04_039196|OH1004|cDNA

ATGAGGCGAACAGTTGTTGCAGGTGGGTCACCATTAACAGATGCTCATCAAATGGGTTACGATGGAGCTCATAAAGATCCCAGAGATGATGAAGAAAGCACAAAAAGAAATCAACAAAAATCTTCTTACATGTTGGAGAAAGCTAATTCGGTGAATCTAGCCCTAGATGCCGCCGTTCCACTCAAACACCCTGTAAAGATCCATGAATCTATGCGGTACTCCCTTCTCGCCGGCGAACTCGTTGGAGGTGACCAGTTAAC...

CDS

Download CDS FASTA

318 bp · LXL04_039196|LXL04_039196|OH1004|CDS

ATGAGGCGAACAGTTGTTGCAGGTGGGTCACCATTAACAGATGCTCATCAAATGGGTTACGATGGAGCTCATAAAGATCCCAGAGATGATGAAGAAAGCACAAAAAGAAATCAACAAAAATCTTCTTACATGTTGGAGAAAGCTAATTCGGTGAATCTAGCCCTAGATGCCGCCGTTCCACTCAAACACCCTGTAAAGATCCATGAATCTATGCGGTACTCCCTTCTCGCCGGCGAACTCGTTGGAGGTGACCAGTTAAC...

Protein

Download Protein FASTA

105 aa · LXL04_039196|LXL04_039196|OH1004|PROTEIN

MRRTVVAGGSPLTDAHQMGYDGAHKDPRDDEESTKRNQQKSSYMLEKANSVNLALDAAVPLKHPVKIHESMRYSLLAGELVGGDQLTAMTAAYAVEMIHTMSYCR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_039196`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_039196

Location Chr09:62056370-62056955 (-)

Description Similar to GGPS: Geranylgeranyl pyrophosphate synthase, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g36810`	Heterodimeric geranyl(geranyl)-diphosphate (GPP) synthase large subunit.	No verified direct reference in this release
`At2g18620`	Catalyzes the trans-addition of the three molecules of IPP onto DMAPP to form geranylgeranyl pyrophosphate.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_039196 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0008299 isoprenoid biosynthetic process Biological Process

GO:0009625 response to insect Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0016114 terpenoid biosynthetic process Biological Process

GO:0016117 carotenoid biosynthetic process Biological Process

GO:0033384 geranyl diphosphate biosynthetic process Biological Process

GO:0033386 geranylgeranyl diphosphate biosynthetic process Biological Process

GO:0043693 monoterpene biosynthetic process Biological Process

GO:0045337 farnesyl diphosphate biosynthetic process Biological Process

GO:0080027 response to herbivore Biological Process

KEGG gene cross-reference

ath:AT2G18620

ath:AT4G36810

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.308

Rank 1 · LXL04_039196 · OH-1004

Cytoplasm0.292

Rank 2 · LXL04_039196 · OH-1004

Nucleus0.212

Rank 3 · LXL04_039196 · OH-1004

Cell membrane0.097

Rank 4 · LXL04_039196 · OH-1004

Plastid0.091

Rank 5 · LXL04_039196 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P34802`	Arabidopsis thaliana	Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic	60.811%	Swiss-Prot	moderate database homology
`Q9ZU77`	Arabidopsis thaliana	Geranylgeranyl pyrophosphate synthase 7, chloroplastic	51.163%	Swiss-Prot	moderate database homology

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