LXL04_038932 | RubberDandelionOmics

Gene overview

LXL04_038932

Reference: OH-1004 Chr: Chr09 Coordinates: 53582673-53583957 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1113 bp · LXL04_038932|LXL04_038932|OH1004|cDNA

ATGCTTTGCATCATCATTCTTCTCACTTTCTTCCTCAAAGTCTCAAAGagaatctctctctctctctctctctctctctcacgaATGGCTTCAACTGAAGCAGAAGATCCATCACAATCCCTCAAACACAAGACATCAGTTTTAAGGGTCTCCATACACTGTAAAGGCTGCAAACGCAAAGTCCACAAGCTCCTTCAATCCGTTCCTGGAGTTCAGGAAATACAAATTGAAGCCAAACAACAAATGGTGGTGGTAACTGG...

CDS

Download CDS FASTA

1113 bp · LXL04_038932|LXL04_038932|OH1004|CDS

ATGCTTTGCATCATCATTCTTCTCACTTTCTTCCTCAAAGTCTCAAAGAGAATCTCTCTCTCTCTCTCTCTCTCTCTCTCACGAATGGCTTCAACTGAAGCAGAAGATCCATCACAATCCCTCAAACACAAGACATCAGTTTTAAGGGTCTCCATACACTGTAAAGGCTGCAAACGCAAAGTCCACAAGCTCCTTCAATCCGTTCCTGGAGTTCAGGAAATACAAATTGAAGCCAAACAACAAATGGTGGTGGTAACTGG...

Protein

Download Protein FASTA

370 aa · LXL04_038932|LXL04_038932|OH1004|PROTEIN

MLCIIILLTFFLKVSKRISLSLSLSLSRMASTEAEDPSQSLKHKTSVLRVSIHCKGCKRKVHKLLQSVPGVQEIQIEAKQQMVVVTGDVSSETLLKKLVKAGKHAELWPEKPPEIRTQEPEKVPTTSQGSGSEPSHVSVTEIKPPTTKTDNPVEDPKKVSKPAVPGGGEPAVSSGKNDEGVGKSEGGKDSTEAKPEENSASNQASQPATVSEKKEEQTEKDGGGGGGGEGKKKKKKKPQNGDRNGSSSGPPPSIGRSVNG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_038932`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_038932

Location Chr09:53582673-53583957 (-)

Description Similar to HIPP35: Heavy metal-associated isoprenylated plant protein 35

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g56210`	Heavy-metal-binding protein.	No verified direct reference in this release
`At5g27690`	Heavy-metal-binding protein.	No verified direct reference in this release
`At5g19090`	Heavy-metal-binding protein.	No verified direct reference in this release
`At3g06130`	Heavy-metal-binding protein.	No verified direct reference in this release
`At3g05220`	Heavy-metal-binding protein.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038932 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G56210

ath:AT3G06130

ath:AT5G19090

ath:AT5G27690

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.548

Rank 1 · LXL04_038932 · OH-1004

Nucleus0.323

Rank 2 · LXL04_038932 · OH-1004

Cytoplasm0.301

Rank 3 · LXL04_038932 · OH-1004

Endoplasmic reticulum0.073

Rank 4 · LXL04_038932 · OH-1004

Golgi apparatus0.031

Rank 5 · LXL04_038932 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00403.33HMA48-104 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_038932	`PF00403.33`	HMA	48	104	1.8e-12	48.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C7J6`	Arabidopsis thaliana	Heavy metal-associated isoprenylated plant protein 35	35.854%	Swiss-Prot	moderate database homology
`Q84J88`	Arabidopsis thaliana	Heavy metal-associated isoprenylated plant protein 36	56.000%	Swiss-Prot	weak database homology
`F4JZL7`	Arabidopsis thaliana	Heavy metal-associated isoprenylated plant protein 33	51.471%	Swiss-Prot	weak database homology
`Q9M8K5`	Arabidopsis thaliana	Heavy metal-associated isoprenylated plant protein 32	51.471%	Swiss-Prot	weak database homology
`Q0WV37`	Arabidopsis thaliana	Heavy metal-associated isoprenylated plant protein 34	47.059%	Swiss-Prot	weak database homology

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