LXL04_038565 | RubberDandelionOmics

Gene overview

LXL04_038565

Reference: OH-1004 Chr: Chr09 Coordinates: 44185526-44187317 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1377 bp · LXL04_038565|LXL04_038565|OH1004|cDNA

ATGGCTGTTAGGGTTTCGAGTTTCGCATGTTATGTGTGTTTGCTCGCGTTGATAATACAAGTTTCTGGTTCAAGAGCTCTAAACTCGATGCCGGAGGTTCATCGTCATTATCCTAAAGCTTTATCTGATTTGAAGGATGCTATCGTCAAAGGATTAGGGATTCAATCAGAAAACCTCAACTTATTTGGATTTGATTTGAAGGGCGCCTTGGTAGCAcaatccatggagtttgatcTACAAGTTGATAACAATATTCTTCC...

CDS

Download CDS FASTA

1377 bp · LXL04_038565|LXL04_038565|OH1004|CDS

ATGGCTGTTAGGGTTTCGAGTTTCGCATGTTATGTGTGTTTGCTCGCGTTGATAATACAAGTTTCTGGTTCAAGAGCTCTAAACTCGATGCCGGAGGTTCATCGTCATTATCCTAAAGCTTTATCTGATTTGAAGGATGCTATCGTCAAAGGATTAGGGATTCAATCAGAAAACCTCAACTTATTTGGATTTGATTTGAAGGGCGCCTTGGTAGCACAATCCATGGAGTTTGATCTACAAGTTGATAACAATATTCTTCC...

Protein

Download Protein FASTA

458 aa · LXL04_038565|LXL04_038565|OH1004|PROTEIN

MAVRVSSFACYVCLLALIIQVSGSRALNSMPEVHRHYPKALSDLKDAIVKGLGIQSENLNLFGFDLKGALVAQSMEFDLQVDNNILPIKLLDDVNKWEHVDLPTFLVEDPVRLSDEKGLVEKNRLSGKSLPSLPPFQLAGPMELWIQDAKDMRLFLPVSLSYSYSAIHIIKNFCSDLLTIVNDIQHDVDAGELKKVILADGAVVTVKGAKSVSLRHPIELPLPFNKTNNLFASGLLTLSDHLRQASLTGKQLLSLRITGP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_038565`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_038565

Location Chr09:44185526-44187317 (+)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g64510`	Involved in the regulation of pollen surface morphology, probably by modulating the secretion of proteins and/or lipids during pollen development.	Overexpression of the endoplasmic reticulum stress-inducible gene TIN1 causes abnormal pollen surface morphology in Arabidopsis.2017 · DOI: 10.5511/plantbiotechnology.17.0823b

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_038565 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009555 pollen development Biological Process

GO:0010208 pollen wall assembly Biological Process

GO:0030968 endoplasmic reticulum unfolded protein response Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT5G64510

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.309

Rank 1 · LXL04_038565 · OH-1004

Cytoplasm0.168

Rank 2 · LXL04_038565 · OH-1004

Nucleus0.162

Rank 3 · LXL04_038565 · OH-1004

Golgi apparatus0.161

Rank 4 · LXL04_038565 · OH-1004

Plastid0.120

Rank 5 · LXL04_038565 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28340.1TIN171-447 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_038565	`PF28340.1`	TIN1	71	447	2.9e-136	455.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q84JN2`	Arabidopsis thaliana	Protein TUNICAMYCIN INDUCED 1	53.595%	Swiss-Prot	strong database homology

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