LXL04_038346 | RubberDandelionOmics

Gene overview

LXL04_038346

Reference: OH-1004 Chr: Chr09 Coordinates: 38292998-38297532 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

921 bp · LXL04_038346|LXL04_038346|OH1004|cDNA

ATGGCGACAATGGTGAATATATGGATCTGCGAGCTCACGAAGCTTCGAGAGATGATTCAGGTGAAGAACCAGAAGACGAAGCGCCATAATTTATTGGTCAAATCGGTGTCAAATCAACAACAGGAAGAAGAATCGAGAACCAGAAGCACACAACCACCATCTGGGTTGCCGGAGGTGGCGGAGAAACAGGTGTCGGAGGAGACGATATTTTGGATCATGGATCGATTCGCACCTTGCTAtcaaaaGGCAAAATCGTCCAA...

CDS

Download CDS FASTA

921 bp · LXL04_038346|LXL04_038346|OH1004|CDS

ATGGCGACAATGGTGAATATATGGATCTGCGAGCTCACGAAGCTTCGAGAGATGATTCAGGTGAAGAACCAGAAGACGAAGCGCCATAATTTATTGGTCAAATCGGTGTCAAATCAACAACAGGAAGAAGAATCGAGAACCAGAAGCACACAACCACCATCTGGGTTGCCGGAGGTGGCGGAGAAACAGGTGTCGGAGGAGACGATATTTTGGATCATGGATCGATTCGCACCTTGCTATCAAAAGGCAAAATCGTCCAA...

Protein

Download Protein FASTA

306 aa · LXL04_038346|LXL04_038346|OH1004|PROTEIN

MATMVNIWICELTKLREMIQVKNQKTKRHNLLVKSVSNQQQEEESRTRSTQPPSGLPEVAEKQVSEETIFWIMDRFAPCYQKAKSSNHLISQEHGPYHLTAGGNHEAHEASDARRRYLFVLAIYTYIDMLKMLDLNLDVVVPVDDSGYKRDRIEFETENNVLEDRQSEIYSGTSVSSDVLNADDDPPVTNAADADDEGSVSCTASNIDKLSYHFGFADRSGKVKELSNGVSGRIITRQFFPVDGDLELEDEELVSHSAPR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_038346`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_038346

Location Chr09:38292998-38297532 (-)

Description Similar to TOE2: AP2-like ethylene-responsive transcription factor TOE2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g60120`	Probably acts as a transcriptional activator.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: B8B0I8`	Probable transcription factor (By similarity).	No verified direct reference in this release
`Os06g0639200`	Probable transcription factor (By similarity).	No verified direct reference in this release
`UniProt: B8AMA9`	Probable transcription factor (By similarity).	No verified direct reference in this release
`Os03g0818800`	Probable transcription factor (By similarity).	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.2012 · DOI: 10.1111/j.1365-313x.2011.04804.x OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.2016 · DOI: 10.3389/fpls.2016.01891

Functional annotation source

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Functional annotation source: OH1004 · LXL04_038346 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0009909 regulation of flower development Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0010629 negative regulation of gene expression Biological Process

GO:0045824 negative regulation of innate immune response Biological Process

GO:0080050 regulation of seed development Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0001222 transcription corepressor binding Molecular Function

GO:0003677 DNA binding Molecular Function

KEGG gene cross-reference

ath:AT5G60120

osa:4334582

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.416

Rank 1 · LXL04_038346 · OH-1004

Cytoplasm0.386

Rank 2 · LXL04_038346 · OH-1004

Cell membrane0.144

Rank 3 · LXL04_038346 · OH-1004

Mitochondrion0.106

Rank 4 · LXL04_038346 · OH-1004

Endoplasmic reticulum0.074

Rank 5 · LXL04_038346 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LVG2`	Arabidopsis thaliana	AP2-like ethylene-responsive transcription factor TOE2	32.447%	Swiss-Prot	moderate database homology
`B8B0I8`	Oryza sativa subsp. indica	APETALA2-like protein 4	45.000%	Swiss-Prot	weak database homology
`A0A0N7KMH0`	Oryza sativa subsp. japonica	APETALA2-like protein 4	45.000%	Swiss-Prot	weak database homology
`B8AMA9`	Oryza sativa subsp. indica	APETALA2-like protein 2	95.833%	Swiss-Prot	weak database homology
`Q84TB5`	Oryza sativa subsp. japonica	APETALA2-like protein 2	95.833%	Swiss-Prot	weak database homology

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