LXL04_038231 | RubberDandelionOmics

Gene overview

LXL04_038231

Reference: OH-1004 Chr: Chr09 Coordinates: 34793528-34794935 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

753 bp · LXL04_038231|LXL04_038231|OH1004|cDNA

ATGGCAGATCAAGTGTTGGAAGGTAGCCAGCCAGTTGATCTTTCCAAACATCCATCTGGAATCGTTCCTACTCTTCAGAACATTGTGTCTACTGTGAATCTTGATTGCAAGCTAGACTTAAAGGCGATTGCACTTCAAGCTCGTAATGCTGAATATAATCCAAAGCGTTTTGCTGCTGTGATCATGAGAATAAGAGAACCAAAAACAACAGCATTAATCTTTGCTTCAGGTAAAATGGTATGTACAGGAGCCAAGAGTGA...

CDS

Download CDS FASTA

753 bp · LXL04_038231|LXL04_038231|OH1004|CDS

ATGGCAGATCAAGTGTTGGAAGGTAGCCAGCCAGTTGATCTTTCCAAACATCCATCTGGAATCGTTCCTACTCTTCAGAACATTGTGTCTACTGTGAATCTTGATTGCAAGCTAGACTTAAAGGCGATTGCACTTCAAGCTCGTAATGCTGAATATAATCCAAAGCGTTTTGCTGCTGTGATCATGAGAATAAGAGAACCAAAAACAACAGCATTAATCTTTGCTTCAGGTAAAATGGTATGTACAGGAGCCAAGAGTGA...

Protein

Download Protein FASTA

250 aa · LXL04_038231|LXL04_038231|OH1004|PROTEIN

MADQVLEGSQPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQWYVLSLSLTNFHSSLTECVDFCCRILILDEMVLYGVKLTLGFDRMWYLEI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_038231`
TK1151 ID	TkA04G408010
OH-1004 ID	LXL04_038231
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 80.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_038231`
Location	Chr09:34793528-34794935 (-)
Description	Similar to TBP: TATA-box-binding protein
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_038231` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006352 DNA-templated transcription initiation Biological Process GO:0005634 nucleus Cellular Component GO:0003677 DNA binding Molecular Function GO:0016251 RNA polymerase II general transcription initiation factor activity Molecular Function
KEGG gene cross-reference	gmx:100810213 gmx:547805 nta:107789091 sot:102583666 zma:542241 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.546

Rank 1 · LXL04_038231 · OH-1004

Cytoplasm0.395

Rank 2 · LXL04_038231 · OH-1004

Mitochondrion0.091

Rank 3 · LXL04_038231 · OH-1004

Cell membrane0.047

Rank 4 · LXL04_038231 · OH-1004

Endoplasmic reticulum0.043

Rank 5 · LXL04_038231 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00352.28TBP23-104 aa

PF00352.28TBP112-195 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_038231	`PF00352.28`	TBP	23	104	1.1e-69	231.0
LXL04_038231	`PF00352.28`	TBP	112	195	1.1e-69	231.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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