LXL04_038220 | RubberDandelionOmics

Gene overview

LXL04_038220

Reference: OH-1004 Chr: Chr09 Coordinates: 34536776-34538793 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1240 bp · LXL04_038220|LXL04_038220|OH1004|cDNA

ATGAAACACTCCCACGTGTCTGCTTCTCATTGGCTATATACCAGCAACGTCTTTCCCATTCAGTCGACGGCGAACGATCGATTTATTAAATAGAAGACCACAACAAAACACTCCGATAATCAATACATTATGGATCACCGGTTTCTCCTTCTCACATTGCATTCTCTTCTCGCCGTTACCTTTTTGGTCTCCGGTGGCGGTGCTAGCCCTGGTTCGGGAGACGATGTTTTCATCCGTCAGGTGGTCGATGACGGAGCCCA...

CDS

Download CDS FASTA

1104 bp · LXL04_038220|LXL04_038220|OH1004|CDS

ATGGATCACCGGTTTCTCCTTCTCACATTGCATTCTCTTCTCGCCGTTACCTTTTTGGTCTCCGGTGGCGGTGCTAGCCCTGGTTCGGGAGACGATGTTTTCATCCGTCAGGTGGTCGATGACGGAGCCCAGTCGTTGAATACGGAGGAGCATCACTTCGGTGCCTTCAAGCGAAAGTTCGGTAAATCATACGCGTCACAGGAGGAACACGATTACAGGTTCACTGTCTTCAAAACTAACATCCGCCGCGCAAAGCGTCA...

Protein

Download Protein FASTA

367 aa · LXL04_038220|LXL04_038220|OH1004|PROTEIN

MDHRFLLLTLHSLLAVTFLVSGGGASPGSGDDVFIRQVVDDGAQSLNTEEHHFGAFKRKFGKSYASQEEHDYRFTVFKTNIRRAKRHQKLDPSAVHGVTRFSDMTSAEFRKHLGLRSRLRFPADASEAPILPTSDLPDDFDWRDHGAVTDVKNQGSCGSCWSFSTTGALEGANFLATGKLESLSEQQLVDCDHECDPEEKESCDSGCDGGLMNSAFEYTLKVGGLMREEDYPYTGNDGGKCKFDKNKIVASVSNFSVVSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_038220`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_038220

Location Chr09:34536776-34538793 (-)

Description Similar to RD19A: Cysteine protease RD19A

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g39090`	Probable thiol protease (By similarity).	No verified direct reference in this release
`At2g21430`	Probable thiol protease.	No verified direct reference in this release
`At4g16190`	Probable thiol protease.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_038220 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0010269 response to selenium ion Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0051603 proteolysis involved in protein catabolic process Biological Process

GO:0000323 lytic vacuole Cellular Component

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005615 extracellular space Cellular Component

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT2G21430

ath:AT4G16190

ath:AT4G39090

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.693

Rank 1 · LXL04_038220 · OH-1004

Extracellular0.170

Rank 2 · LXL04_038220 · OH-1004

Cytoplasm0.168

Rank 3 · LXL04_038220 · OH-1004

Endoplasmic reticulum0.114

Rank 4 · LXL04_038220 · OH-1004

Cell membrane0.109

Rank 5 · LXL04_038220 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08246.18Inhibitor_I2953-109 aa

PF00112.30Peptidase_C1136-360 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_038220	`PF08246.18`	Inhibitor_I29	53	109	2.8e-16	60.3
LXL04_038220	`PF00112.30`	Peptidase_C1	136	360	1.3e-73	248.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P43296`	Arabidopsis thaliana	Cysteine protease RD19A	78.443%	Swiss-Prot	strong database homology
`P43295`	Arabidopsis thaliana	Probable cysteine protease RD19B	71.901%	Swiss-Prot	strong database homology
`Q9SUL1`	Arabidopsis thaliana	Probable cysteine protease RD19C	69.722%	Swiss-Prot	strong database homology

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