Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1521 bp · LXL04_038154|LXL04_038154|OH1004|cDNA
ATGAATATGGCTTCCTTTTCTCCCACTCTACTAAAATCAAATGGATCTTCACTGACTTCAGCAAAGATGATGACTATGAACAGAATAACTTCATCGTCATCATCTCCACCGCCGGTGAAGACATCGATACCGTCGCAATCGACTTCGTTACCGATCCGTTCAATACCCGGGAGCTATGGATTGCCGCTGCTCGGACCATTCGTTGACCGGCTTGACTACTCCTGGTTCCAAGGATCCGATGATTTTTTCAGGAAGAGGAT...
1521 bp · LXL04_038154|LXL04_038154|OH1004|CDS
ATGAATATGGCTTCCTTTTCTCCCACTCTACTAAAATCAAATGGATCTTCACTGACTTCAGCAAAGATGATGACTATGAACAGAATAACTTCATCGTCATCATCTCCACCGCCGGTGAAGACATCGATACCGTCGCAATCGACTTCGTTACCGATCCGTTCAATACCCGGGAGCTATGGATTGCCGCTGCTCGGACCATTCGTTGACCGGCTTGACTACTCCTGGTTCCAAGGATCCGATGATTTTTTCAGGAAGAGGAT...
Protein
Download Protein FASTA506 aa · LXL04_038154|LXL04_038154|OH1004|PROTEIN
MNMASFSPTLLKSNGSSLTSAKMMTMNRITSSSSSPPPVKTSIPSQSTSLPIRSIPGSYGLPLLGPFVDRLDYSWFQGSDDFFRKRIEKNQSTVFRTNVPPSFPFFLANPNVVAVLDCKSFAHMFDMELVDKKNILVGDFMPSTKFTGDRRVCAYLDTTEPQHEQIKSFVMDILKRSSTIWIPTLTTLLDKMFDTIESQLPSGPVNYLVPIQKFNFSFLSRVIAGANPENSPDMAENGYVRMGRWLAVQILPTVPITAFQ...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_038154 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_038154 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr09:32381694-32384857 (+) | |||||||||
| Description | Similar to HPL: Fatty acid hydroperoxide lyase, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006631 fatty acid metabolic process Biological Process GO:0006633 fatty acid biosynthetic process Biological Process GO:0006952 defense response Biological Process GO:0009611 response to wounding Biological Process GO:0009695 jasmonic acid biosynthetic process Biological Process GO:0010597 green leaf volatile biosynthetic process Biological Process GO:0016125 sterol metabolic process Biological Process GO:0031408 oxylipin biosynthetic process Biological Process GO:0009507 chloroplast Cellular Component GO:0009535 chloroplast thylakoid membrane Cellular Component GO:0009707 chloroplast outer membrane Cellular Component GO:0009941 chloroplast envelope Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT4G15440 sly:543642 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00067.28p450341-490 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_038154 | PF00067.28 | p450 | 341 | 490 | 3.8e-18 | 66.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.