LXL04_038122 | RubberDandelionOmics

Gene overview

LXL04_038122

Reference: OH-1004 Chr: Chr09 Coordinates: 31727207-31729034 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1329 bp · LXL04_038122|LXL04_038122|OH1004|cDNA

ATGTGGGATGGAGCTGGGTCTATCATATATACCCGACGAGGTCGATACGTGAACTCTCACGCAAGAAAACCAAAAATGGAAGAAACTCCGACAACCAACATCGGCGGAGACGCCCATCAGGAAATGATCGCAGCATTCTCAGAGATAACTTCTGCTTCCAAAGAAGAAGCCTCATTCTTCCTCGAATCGCACAACTTCGATCTCGATTCCGCCATCTCCACCTTCTTCGAAAACGCTGCTGTCGCAGAAGAGGCTCCTAT...

CDS

Download CDS FASTA

1329 bp · LXL04_038122|LXL04_038122|OH1004|CDS

ATGTGGGATGGAGCTGGGTCTATCATATATACCCGACGAGGTCGATACGTGAACTCTCACGCAAGAAAACCAAAAATGGAAGAAACTCCGACAACCAACATCGGCGGAGACGCCCATCAGGAAATGATCGCAGCATTCTCAGAGATAACTTCTGCTTCCAAAGAAGAAGCCTCATTCTTCCTCGAATCGCACAACTTCGATCTCGATTCCGCCATCTCCACCTTCTTCGAAAACGCTGCTGTCGCAGAAGAGGCTCCTAT...

Protein

Download Protein FASTA

442 aa · LXL04_038122|LXL04_038122|OH1004|PROTEIN

MWDGAGSIIYTRRGRYVNSHARKPKMEETPTTNIGGDAHQEMIAAFSEITSASKEEASFFLESHNFDLDSAISTFFENAAVAEEAPIAALPARNPNRPSDTHSPSFSPSSSPSRSRSASPPPSLGLQQMAGGNPYNLRSRNPATDKKPSGSRSTGRIRTFADLNRPDDDSGSDSDEPQEYYTGGEKSGMLVQDPTRANDVESLFNQARQAGAEEGTLEQLQPSSSTRSFAGRGRLLSGETTSATPQQSEPDVHTHTITFW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_038122`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_038122

Location Chr09:31727207-31729034 (+)

Description Similar to PUX5: Plant UBX domain-containing protein 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g15410`	Plant UBX domain-containing protein 5.	No verified direct reference in this release
`At4g04210`	Plant UBX domain-containing protein 4.	No verified direct reference in this release
`At4g22150`	Plant UBX domain-containing protein 3.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038122 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000045 autophagosome assembly Biological Process

GO:0000132 establishment of mitotic spindle orientation Biological Process

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0007030 Golgi organization Biological Process

GO:0031468 nuclear membrane reassembly Biological Process

GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process

GO:0046604 positive regulation of mitotic centrosome separation Biological Process

GO:0061025 membrane fusion Biological Process

GO:1904780 negative regulation of protein localization to centrosome Biological Process

GO:0005634 nucleus Cellular Component

GO:0005694 chromosome Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT4G04210

ath:AT4G15410

ath:AT4G22150

hsa:55968

pon:100172420

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.743

Rank 1 · LXL04_038122 · OH-1004

Nucleus0.508

Rank 2 · LXL04_038122 · OH-1004

Endoplasmic reticulum0.059

Rank 3 · LXL04_038122 · OH-1004

Cell membrane0.046

Rank 4 · LXL04_038122 · OH-1004

Mitochondrion0.044

Rank 5 · LXL04_038122 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22566.3UBA_839-81 aa

PF14555.13UBA_440-79 aa

PF08059.19SEP257-330 aa

PF00789.27UBX367-441 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_038122	`PF22566.3`	UBA_8	39	81	1.4e-06	28.8
LXL04_038122	`PF14555.13`	UBA_4	40	79	1.4e-12	47.9
LXL04_038122	`PF08059.19`	SEP	257	330	3.6e-24	85.9
LXL04_038122	`PF00789.27`	UBX	367	441	4.4e-16	59.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q7Y175`	Arabidopsis thaliana	Plant UBX domain-containing protein 5	51.991%	Swiss-Prot	strong database homology
`Q8RWU7`	Arabidopsis thaliana	Plant UBX domain-containing protein 4	62.745%	Swiss-Prot	moderate database homology
`Q9SUG6`	Arabidopsis thaliana	Plant UBX domain-containing protein 3	59.801%	Swiss-Prot	moderate database homology

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