LXL04_038098 | RubberDandelionOmics

Gene overview

LXL04_038098

Reference: OH-1004 Chr: Chr09 Coordinates: 31206062-31206461 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

342 bp · LXL04_038098|LXL04_038098|OH1004|cDNA

ATGGCGGTGAGTTTCAATGAAAAGGATAAAGATTATGTCAACTCTACTCTGGTTGAAGCTGTTGAGGTCAAAAGTGGCCCTGATGGATTTGTGATTAAGACGAGAGATGGAAAGCATTTAAGATGTGCTCATAACAACCCTCAAGGTCGACATCTCCCTAATTATGCACCACATCCTGCAATTGTACTAAAGATGGAAGATGGGACTGGCCTTCTTCTTCCTATAATCGTTTTGTATATCATAATTGATAGAATTTCGAG...

CDS

Download CDS FASTA

342 bp · LXL04_038098|LXL04_038098|OH1004|CDS

ATGGCGGTGAGTTTCAATGAAAAGGATAAAGATTATGTCAACTCTACTCTGGTTGAAGCTGTTGAGGTCAAAAGTGGCCCTGATGGATTTGTGATTAAGACGAGAGATGGAAAGCATTTAAGATGTGCTCATAACAACCCTCAAGGTCGACATCTCCCTAATTATGCACCACATCCTGCAATTGTACTAAAGATGGAAGATGGGACTGGCCTTCTTCTTCCTATAATCGTTTTGTATATCATAATTGATAGAATTTCGAG...

Protein

Download Protein FASTA

113 aa · LXL04_038098|LXL04_038098|OH1004|PROTEIN

MAVSFNEKDKDYVNSTLVEAVEVKSGPDGFVIKTRDGKHLRCAHNNPQGRHLPNYAPHPAIVLKMEDGTGLLLPIIVLYIIIDRISRVTPAVIESINLYLTFAYFIDNVAKLY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_038098`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_038098

Location Chr09:31206062-31206461 (+)

Description Similar to BBD1: Bifunctional nuclease 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g75380`	Bifunctional nuclease with both RNase and DNase activities.	Novel bifunctional nucleases, OmBBD and AtBBD1, are involved in abscisic acid-mediated callose deposition in Arabidopsis.2010 · DOI: 10.1104/pp.109.147645
`At1g19660`	Bifunctional nuclease with both RNase and DNase activities.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0357000`	Bifunctional nuclease with both RNase and DNase activities.	No verified direct reference in this release
`Os01g0702000`	Bifunctional nuclease with both RNase and DNase activities.	No verified direct reference in this release
`UniProt: B8A8D2`	Bifunctional nuclease with both RNase and DNase activities.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038098 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009414 response to water deprivation Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0010119 regulation of stomatal movement Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0030891 VCB complex Cellular Component

GO:0004518 nuclease activity Molecular Function

GO:0004530 deoxyribonuclease I activity Molecular Function

GO:0004540 RNA nuclease activity Molecular Function

GO:0016787 hydrolase activity Molecular Function

KEGG gene cross-reference

ath:AT1G19660

ath:AT1G75380

dosa:Os01g0702000

dosa:Os08g0357000

osa:4326932

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.228

Rank 1 · LXL04_038098 · OH-1004

Nucleus0.185

Rank 2 · LXL04_038098 · OH-1004

Cell membrane0.181

Rank 3 · LXL04_038098 · OH-1004

Plastid0.178

Rank 4 · LXL04_038098 · OH-1004

Endoplasmic reticulum0.122

Rank 5 · LXL04_038098 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FWS6`	Arabidopsis thaliana	Bifunctional nuclease 1	77.215%	Swiss-Prot	moderate database homology
`Q93VH2`	Arabidopsis thaliana	Bifunctional nuclease 2	74.684%	Swiss-Prot	moderate database homology
`Q6YZM6`	Oryza sativa subsp. japonica	Bifunctional nuclease 2	67.949%	Swiss-Prot	moderate database homology
`Q5N8J3`	Oryza sativa subsp. japonica	Bifunctional nuclease 1	63.768%	Swiss-Prot	moderate database homology
`B8A8D2`	Oryza sativa subsp. indica	Bifunctional nuclease 1	63.768%	Swiss-Prot	moderate database homology

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