Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1473 bp · LXL04_038068|LXL04_038068|OH1004|cDNA
ATGCCACCAATAACCATATATCTAATCCTCATATTCTCTCTCTTTATTCCGCCACACCCAACCACCGCCGATCAATCATTCATCTCGTCGCTCATAACCCAACCCGGGCTCGATTTCGTCAAGAATTTACTCATTTCGAAAGCGATTCCTACACTCACAGCCGCTCGGATTTCCGCAATCCAAAAGACTGTTAGAATCCCTCTAATTGGTAAAGTTCATATCGTTCTTTCAGACATCACTATCAACCGGGTCAATGTCGG...
1473 bp · LXL04_038068|LXL04_038068|OH1004|CDS
ATGCCACCAATAACCATATATCTAATCCTCATATTCTCTCTCTTTATTCCGCCACACCCAACCACCGCCGATCAATCATTCATCTCGTCGCTCATAACCCAACCCGGGCTCGATTTCGTCAAGAATTTACTCATTTCGAAAGCGATTCCTACACTCACAGCCGCTCGGATTTCCGCAATCCAAAAGACTGTTAGAATCCCTCTAATTGGTAAAGTTCATATCGTTCTTTCAGACATCACTATCAACCGGGTCAATGTCGG...
Protein
Download Protein FASTA490 aa · LXL04_038068|LXL04_038068|OH1004|PROTEIN
MPPITIYLILIFSLFIPPHPTTADQSFISSLITQPGLDFVKNLLISKAIPTLTAARISAIQKTVRIPLIGKVHIVLSDITINRVNVGLSNIKPDVTGVTIFGSDVTCDLSMKWHYSYGTWLGPVSISDSGTARVKVMGMETGTKLGLHNQEGSLNLYVMECNCHMRDISIDLNGGASWLYQGIVDAFEEPIISAVTKEIIKKLKAGVIKLGSVMKSLPKLVEVDDIASLNVTFVDDPFLSDTSLGFRINGLFVEPKKDKY...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_038068 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_038068 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr09:30714933-30717298 (+) | |||||||||
| Description | Similar to At1g04970: Putative BPI/LBP family protein At1g04970 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0002752 cell surface pattern recognition receptor signaling pathway Biological Process GO:0006869 lipid transport Biological Process GO:0006968 cellular defense response Biological Process GO:0008228 opsonization Biological Process GO:0010468 regulation of gene expression Biological Process GO:0015920 lipopolysaccharide transport Biological Process GO:0031663 lipopolysaccharide-mediated signaling pathway Biological Process GO:0032490 detection of molecule of bacterial origin Biological Process GO:0032496 response to lipopolysaccharide Biological Process GO:0032720 negative regulation of tumor necrosis factor production Biological Process GO:0032757 positive regulation of interleukin-8 production Biological Process GO:0032760 positive regulation of tumor necrosis factor production Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT1G04970 ath:AT3G20270 bta:512242 hsa:3929 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01273.32LBP_BPI_CETP36-205 aaPF02886.25LBP_BPI_CETP_C222-476 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_038068 | PF01273.32 | LBP_BPI_CETP | 36 | 205 | 1.8e-16 | 61.0 |
| LXL04_038068 | PF02886.25 | LBP_BPI_CETP_C | 222 | 476 | 1.9e-31 | 110.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.