LXL04_037832 | RubberDandelionOmics

Gene overview

LXL04_037832

Reference: OH-1004 Chr: Chr09 Coordinates: 22274648-22276083 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1017 bp · LXL04_037832|LXL04_037832|OH1004|cDNA

ATGGTAGCTCTCTCGAAACCTCCGATTGAACAGTTCTTCATGAAGACCTCTAAATTACCAAACACAAACCCGTTGATCTTTCCAACGATTCCGCTCATTGACCTCTCGAAACCTGAATCAAAACAACATCTTGTTAAAGCTTGTCAAGATTTCGGATTCTTCAAGGTCGTTAACCATGGCGTTCCCGCGAAGTTCATCAATAAACTCGAATCAGAAGCCGTTAAATTCTTCTCTTCTCCTCTTTCTGTCAAAGAGAAAGC...

CDS

Download CDS FASTA

1017 bp · LXL04_037832|LXL04_037832|OH1004|CDS

ATGGTAGCTCTCTCGAAACCTCCGATTGAACAGTTCTTCATGAAGACCTCTAAATTACCAAACACAAACCCGTTGATCTTTCCAACGATTCCGCTCATTGACCTCTCGAAACCTGAATCAAAACAACATCTTGTTAAAGCTTGTCAAGATTTCGGATTCTTCAAGGTCGTTAACCATGGCGTTCCCGCGAAGTTCATCAATAAACTCGAATCAGAAGCCGTTAAATTCTTCTCTTCTCCTCTTTCTGTCAAAGAGAAAGC...

Protein

Download Protein FASTA

338 aa · LXL04_037832|LXL04_037832|OH1004|PROTEIN

MVALSKPPIEQFFMKTSKLPNTNPLIFPTIPLIDLSKPESKQHLVKACQDFGFFKVVNHGVPAKFINKLESEAVKFFSSPLSVKEKAGPPDPFGYGNKSIGRNGDVGWVEYLLLNAKPESDYQRYLSVFEENPEVFQGVVNDYVTSVKKMACEILELLADEMKLQPRNVFSKLLMDEQSDSAFRVNHYPPCPEFQESEKNGRKLVGFGEHTDPQIISVLRSNNTSGLEISLRDGSWMSVPADSDSFFINVGDSLQVMTNG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037832`
TK1151 ID	TkA04G355690
OH-1004 ID	LXL04_037832
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037832

Location Chr09:22274648-22276083 (+)

Description Similar to GA2OX1: Gibberellin 2-beta-dioxygenase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g30040`	Catalyzes the 2-beta-hydroxylation of several biologically active gibberellins, leading to the homeostatic regulation of their endogenous level.	No verified direct reference in this release
`At1g78440`	Catalyzes the 2-beta-hydroxylation of several biologically active gibberellins, leading to the homeostatic regulation of their endogenous level.	No verified direct reference in this release
`At2g34555`	Catalyzes the 2-beta-hydroxylation of several biologically active gibberellins, leading to the homeostatic regulation of their endogenous level.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037832 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009416 response to light stimulus Biological Process

GO:0009639 response to red or far red light Biological Process

GO:0009686 gibberellin biosynthetic process Biological Process

GO:0010114 response to red light Biological Process

GO:0045487 gibberellin catabolic process Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0045543 gibberellin 2-beta-dioxygenase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G30040

ath:AT1G78440

ath:AT2G34555

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.668

Rank 1 · LXL04_037832 · OH-1004

Nucleus0.464

Rank 2 · LXL04_037832 · OH-1004

Endoplasmic reticulum0.051

Rank 3 · LXL04_037832 · OH-1004

Cell membrane0.046

Rank 4 · LXL04_037832 · OH-1004

Plastid0.045

Rank 5 · LXL04_037832 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14226.13DIOX_N30-122 aa

PF03171.272OG-FeII_Oxy180-284 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037832	`PF14226.13`	DIOX_N	30	122	4.9e-17	63.4
LXL04_037832	`PF03171.27`	2OG-FeII_Oxy	180	284	5.5e-28	98.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9XFR9`	Arabidopsis thaliana	Gibberellin 2-beta-dioxygenase 2	59.477%	Swiss-Prot	strong database homology
`Q8LEA2`	Arabidopsis thaliana	Gibberellin 2-beta-dioxygenase 1	59.677%	Swiss-Prot	strong database homology
`O64692`	Arabidopsis thaliana	Gibberellin 2-beta-dioxygenase 3	53.443%	Swiss-Prot	strong database homology

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