LXL04_037820 | RubberDandelionOmics

Gene overview

LXL04_037820

Reference: OH-1004 Chr: Chr09 Coordinates: 22040037-22043504 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1836 bp · LXL04_037820|LXL04_037820|OH1004|cDNA

ATGCAGCAAGATCGTCGAAGAAAGAGTCCAAAAGACATCGAGTTCTTCACAGAATACGGCGAATCAAACCGATACAAAATCCTCGAGATTATAGGAAAGGGAAGCTATGGAGTCGTTTGTGCAGCCGTTGACACACAAACCGGTGAAAAAGTTGCAATCAAGAAGATAACCAACATTTTTGAACATTCATCAGACGCTATTCGAATTTTGCGCGAGATTAAATTGCTTAGGCTTCTTCGGCATCCTGATATCGTTGAAAT...

CDS

Download CDS FASTA

1836 bp · LXL04_037820|LXL04_037820|OH1004|CDS

ATGCAGCAAGATCGTCGAAGAAAGAGTCCAAAAGACATCGAGTTCTTCACAGAATACGGCGAATCAAACCGATACAAAATCCTCGAGATTATAGGAAAGGGAAGCTATGGAGTCGTTTGTGCAGCCGTTGACACACAAACCGGTGAAAAAGTTGCAATCAAGAAGATAACCAACATTTTTGAACATTCATCAGACGCTATTCGAATTTTGCGCGAGATTAAATTGCTTAGGCTTCTTCGGCATCCTGATATCGTTGAAAT...

Protein

Download Protein FASTA

611 aa · LXL04_037820|LXL04_037820|OH1004|PROTEIN

MQQDRRRKSPKDIEFFTEYGESNRYKILEIIGKGSYGVVCAAVDTQTGEKVAIKKITNIFEHSSDAIRILREIKLLRLLRHPDIVEIKRIMLPPSRREFKDIYVVFELMESDLHQVIKANDDLTHEHHRFFLYQMLRALKYMHTANVYHRDLKPKNILANANCKLKICDFGLARAAFTDTPTTIFWTDYVATRWYRAPELCGSFYSKYTPAVDIWGIGCIFAEVLTGKPLFPGKSVVHQLELITDLLGTPSSDTISRVRN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037820`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037820

Location Chr09:22040037-22043504 (+)

Description Similar to MPK18: Mitogen-activated protein kinase 18

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g53510`	Mitogen-activated protein kinase (MAPK) that is specifically regulated by PHS1 and MAPKKK20 and mediates signaling that regulates cortical microtubule functions, maybe through regulation of microtubule dynamic instability.	Arabidopsis mitogen-activated protein kinase MPK18 mediates cortical microtubule functions in plant cells.2009 · DOI: 10.1111/j.1365-313x.2009.03895.x The Arabidopsis Mitogen-Activated Protein Kinase Kinase Kinase 20 (MKKK20) Acts Upstream of MKK3 and MPK18 in Two Separate Signaling Pathways Involved in Root Microtubule Functions.2017 · DOI: 10.3389/fpls.2017.01352
`At3g14720`	Mitogen-activated protein kinase 19.	No verified direct reference in this release
`At2g42880`	Mitogen-activated protein kinase 20.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0629900`	Mitogen-activated protein kinase 10.	No verified direct reference in this release
`Os01g0665200`	Mitogen-activated protein kinase 8.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_037820 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0043622 cortical microtubule organization Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004707 MAP kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G53510

ath:AT2G42880

ath:AT3G14720

dosa:Os01g0629900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.679

Rank 1 · LXL04_037820 · OH-1004

Nucleus0.292

Rank 2 · LXL04_037820 · OH-1004

Cell membrane0.143

Rank 3 · LXL04_037820 · OH-1004

Lysosome / Vacuole0.048

Rank 4 · LXL04_037820 · OH-1004

Golgi apparatus0.045

Rank 5 · LXL04_037820 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase25-316 aa

PF07714.24PK_Tyr_Ser-Thr27-243 aa

PF06293.21Kdo58-168 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037820	`PF00069.32`	Pkinase	25	316	4e-66	223.8
LXL04_037820	`PF07714.24`	PK_Tyr_Ser-Thr	27	243	3.9e-31	109.0
LXL04_037820	`PF06293.21`	Kdo	58	168	1.3e-06	28.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C5C0`	Arabidopsis thaliana	Mitogen-activated protein kinase 18	63.785%	Swiss-Prot	strong database homology
`Q9LUC3`	Arabidopsis thaliana	Mitogen-activated protein kinase 19	65.124%	Swiss-Prot	strong database homology
`Q9SJG9`	Arabidopsis thaliana	Mitogen-activated protein kinase 20	71.236%	Swiss-Prot	strong database homology
`Q5ZCI1`	Oryza sativa subsp. japonica	Mitogen-activated protein kinase 10	71.591%	Swiss-Prot	strong database homology
`Q5SN53`	Oryza sativa subsp. japonica	Mitogen-activated protein kinase 8	78.860%	Swiss-Prot	moderate database homology

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