LXL04_037788 | RubberDandelionOmics

Gene overview

LXL04_037788

Reference: OH-1004 Chr: Chr09 Coordinates: 21204454-21210921 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1210 bp · LXL04_037788|LXL04_037788|OH1004|cDNA

CATATAAATACCCATGTACACATTCATTAACAGAACAAGCCAGAAAACCAAAAAGTGTTTTTTTCATTCCTCCCTCCTCTttctccctctccctctctctctctgcAATTTCTGGGTTTTGCGAGGGAGATTGAAAATGGAGTTGAGCGTAAACATCCATTTGCGTTTCTTATTAGTGATTATCAGCATTCTATCGCCATTAATGGAGGTAAAAGCAATCAAATCCAACGCATCAGCTACGGCCGGGTGTGATCTGTTCC...

CDS

Download CDS FASTA

1197 bp · LXL04_037788|LXL04_037788|OH1004|CDS

ATGTACACATTCATTAACAGAACAAGCCAGAAAACCAAAAAGTGTTTTTTTCATTCCTCCCTCCTCTTTCTCCCTCTCCCTCTCTCTCTCTGCAATTTCTGGGTTTTGCGAGGGAGATTGAAAATGGAGTTGAGCGTAAACATCCATTTGCGTTTCTTATTAGTGATTATCAGCATTCTATCGCCATTAATGGAGGTAAAAGCAATCAAATCCAACGCATCAGCTACGGCCGGGTGTGATCTGTTCCAGGGAAATTGGGT...

Protein

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398 aa · LXL04_037788|LXL04_037788|OH1004|PROTEIN

MYTFINRTSQKTKKCFFHSSLLFLPLPLSLCNFWVLRGRLKMELSVNIHLRFLLVIISILSPLMEVKAIKSNASATAGCDLFQGNWVIDQTYPLYNESTCPFLEKEFNCVNNGRPDRIYLKYRWQPHDCRLSRFDGRNFLEKLRGKRIMFVGDSLSRNQWLSLLCMIHSSVPTANYAVNISLIQDMTTYTFTDYKVKVIYHHNLYLVDIVKRRFGRVLNLGTVTAGKLWLDVDYLVFNTWHWWNRRGASQPFDYIQDGSR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037788`
TK1151 ID	TkA04G351210
OH-1004 ID	LXL04_037788
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 89.698 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037788

Location Chr09:21204454-21210921 (+)

Description Similar to TBL41: Protein trichome birefringence-like 41

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g14850`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At1g29050`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At2g34070`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At2g42570`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At2g31110`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037788 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009827 plant-type cell wall modification Biological Process

GO:0009867 jasmonic acid mediated signaling pathway Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0016413 O-acetyltransferase activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G29050

ath:AT2G31110

ath:AT2G34070

ath:AT2G42570

ath:AT3G14850

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.246

Rank 1 · LXL04_037788 · OH-1004

Extracellular0.196

Rank 2 · LXL04_037788 · OH-1004

Cell membrane0.131

Rank 3 · LXL04_037788 · OH-1004

Endoplasmic reticulum0.086

Rank 4 · LXL04_037788 · OH-1004

Lysosome / Vacuole0.067

Rank 5 · LXL04_037788 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14416.12PMR5N78-129 aa

PF13839.13PC-Esterase131-395 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037788	`PF14416.12`	PMR5N	78	129	1e-24	87.3
LXL04_037788	`PF13839.13`	PC-Esterase	131	395	1.3e-83	282.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4IWA8`	Arabidopsis thaliana	Protein trichome birefringence-like 41	58.232%	Swiss-Prot	strong database homology
`Q8VY22`	Arabidopsis thaliana	Protein trichome birefringence-like 38	55.247%	Swiss-Prot	strong database homology
`O22960`	Arabidopsis thaliana	Protein trichome birefringence-like 37	54.381%	Swiss-Prot	strong database homology
`Q9SIN2`	Arabidopsis thaliana	Protein trichome birefringence-like 39	50.613%	Swiss-Prot	strong database homology
`Q67XC4`	Arabidopsis thaliana	Protein trichome birefringence-like 40	49.091%	Swiss-Prot	moderate database homology

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