LXL04_037717 | RubberDandelionOmics

Gene overview

LXL04_037717

Reference: OH-1004 Chr: Chr09 Coordinates: 19366532-19368195 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1269 bp · LXL04_037717|LXL04_037717|OH1004|cDNA

ATGGCTACTCGCGTTCTCTTTCGAACACTTCTCTCTTCAGCTAACCAAACCCTAATCCATCGCTCCTTCACCACCTCTGCTTATCTTCAACGTCTCCGCCCTATTGTCGCCCTCGCCGCCGGTAGTATCCGTCAGTCGTCCCTTGCGGCTACCAATGCTCGTGATTTCTCAACTCGTCAGACCACATCTTCTCTGAATGATTCCAACCCTAATTGGTCAAATCGTCCCCCGAAGGAGACGATTCTTCTCGATGGTTGCGA...

CDS

Download CDS FASTA

1269 bp · LXL04_037717|LXL04_037717|OH1004|CDS

ATGGCTACTCGCGTTCTCTTTCGAACACTTCTCTCTTCAGCTAACCAAACCCTAATCCATCGCTCCTTCACCACCTCTGCTTATCTTCAACGTCTCCGCCCTATTGTCGCCCTCGCCGCCGGTAGTATCCGTCAGTCGTCCCTTGCGGCTACCAATGCTCGTGATTTCTCAACTCGTCAGACCACATCTTCTCTGAATGATTCCAACCCTAATTGGTCAAATCGTCCCCCGAAGGAGACGATTCTTCTCGATGGTTGCGA...

Protein

Download Protein FASTA

422 aa · LXL04_037717|LXL04_037717|OH1004|PROTEIN

MATRVLFRTLLSSANQTLIHRSFTTSAYLQRLRPIVALAAGSIRQSSLAATNARDFSTRQTTSSLNDSNPNWSNRPPKETILLDGCDFEHWLVVVEKPEGDPTRDEIIDSYINTLAQVVGSYDEARMKIYSVSTRCYYAFGALVSEEVSYKIKGTHIKFKSHSLLLSTLTHQSFTSELPGVRWVLPDSYLDVKNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARANERNRRNDRPRNFDRSRNFERRRENMQENNRGPST...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037717`
TK1151 ID	TkA04G343140
OH-1004 ID	LXL04_037717
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	74.200
Protein coverage (%)	TK1151 99.174 / OH-1004 28.436 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_037717

Location Chr09:19366532-19368195 (-)

Description Similar to MORF8: Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g15000`	Involved in organellar RNA editing.	No verified direct reference in this release
`At3g06790`	Involved in organellar RNA editing.	No verified direct reference in this release
`At2g35240`	Involved in organellar RNA editing.	No verified direct reference in this release
`At1g72530`	Involved in organellar RNA editing.	Comprehensive high-resolution analysis of the role of an Arabidopsis gene family in RNA editing.2013 · DOI: 10.1371/journal.pgen.1003584
`At1g32580`	Involved in organellar RNA editing.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037717 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006397 mRNA processing Biological Process

GO:0009451 RNA modification Biological Process

GO:0016554 cytidine to uridine editing Biological Process

GO:0080156 mitochondrial mRNA modification Biological Process

GO:1900864 mitochondrial RNA modification Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0003729 mRNA binding Molecular Function

GO:0042803 protein homodimerization activity Molecular Function

KEGG gene cross-reference

ath:AT1G32580

ath:AT1G72530

ath:AT2G35240

ath:AT3G06790

ath:AT3G15000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.881

Rank 1 · LXL04_037717 · OH-1004

Nucleus0.089

Rank 2 · LXL04_037717 · OH-1004

Cytoplasm0.075

Rank 3 · LXL04_037717 · OH-1004

Plastid0.056

Rank 4 · LXL04_037717 · OH-1004

Cell membrane0.019

Rank 5 · LXL04_037717 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21864.2MORF_dom88-154 aa

PF21864.2MORF_dom176-202 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037717	`PF21864.2`	MORF_dom	88	154	1.6e-33	115.1
LXL04_037717	`PF21864.2`	MORF_dom	176	202	1.6e-33	115.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LKA5`	Arabidopsis thaliana	Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial	53.348%	Swiss-Prot	strong database homology
`Q84JZ6`	Arabidopsis thaliana	Multiple organellar RNA editing factor 3, mitochondrial	52.830%	Swiss-Prot	weak database homology
`O82169`	Arabidopsis thaliana	Multiple organellar RNA editing factor 6, mitochondrial	38.023%	Swiss-Prot	moderate database homology
`Q9CAH0`	Arabidopsis thaliana	Multiple organellar RNA editing factor 7, mitochondrial	41.071%	Swiss-Prot	weak database homology
`Q9C7Y2`	Arabidopsis thaliana	Multiple organellar RNA editing factor 5, chloroplastic/mitochondrial	40.107%	Swiss-Prot	weak database homology

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