LXL04_037670 | RubberDandelionOmics

Gene overview

LXL04_037670

Reference: OH-1004 Chr: Chr09 Coordinates: 17627810-17631301 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1980 bp · LXL04_037670|LXL04_037670|OH1004|cDNA

AGGTTTACAAGTTCGAAACCACTGATCATGGCCTTATCCACGTTCTCCTCTGTCTTCACGGTTGTGCCATCTAAGAAGATGTCATCGATGTATCGTTTTCTGAGCGATCTACAACCTGAGTTAACCGATAAATGGAAAGTTCATGTCATGGTCACTCGTAAATGGAGAACATTCAATCCGAGGAGTGGGAAAATACTCTCTGCTGACCTGATATTAACCGATGAACGCAACCGATCGATCCATGCCAGGATTCCCGAGTT...

CDS

Download CDS FASTA

1959 bp · LXL04_037670|LXL04_037670|OH1004|CDS

CTGATCATGGCCTTATCCACGTTCTCCTCTGTCTTCACGGTTGTGCCATCTAAGAAGATGTCATCGATGTATCGTTTTCTGAGCGATCTACAACCTGAGTTAACCGATAAATGGAAAGTTCATGTCATGGTCACTCGTAAATGGAGAACATTCAATCCGAGGAGTGGGAAAATACTCTCTGCTGACCTGATATTAACCGATGAACGCAACCGATCGATCCATGCCAGGATTCCCGAGTTATTGATGGAATGTTTTTATAA...

Protein

Download Protein FASTA

652 aa · LXL04_037670|LXL04_037670|OH1004|PROTEIN

MIMALSTFSSVFTVVPSKKMSSMYRFLSDLQPELTDKWKVHVMVTRKWRTFNPRSGKILSADLILTDERNRSIHARIPELLMECFYNKLTEGVVYQIHQFEVKVYRTQYRPLNRDMFIQLLRRTSIRASHIPATVFQRYCFDFIAYGALQSRVYEHTYLSDVIGYLREWSFVKQTGDTSRSNMRQIILSDESHTEINVSLWGNLATKFTDEHIRSLNDKKILVVFSSCKVGISRGVPALHTTCASDIYLNIPLNEMPILN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037670`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037670

Location Chr09:17627810-17631301 (-)

Description No functional description available

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g08020`	Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication.	No verified direct reference in this release
`At5g61000`	Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication.	No verified direct reference in this release
`At5g45400`	Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0214100`	Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication.	Two types of replication protein A in seed plants.2005 · DOI: 10.1111/j.1742-4658.2005.04719.x

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037670 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000723 telomere maintenance Biological Process

GO:0000724 double-strand break repair via homologous recombination Biological Process

GO:0006260 DNA replication Biological Process

GO:0006281 DNA repair Biological Process

GO:0006289 nucleotide-excision repair Biological Process

GO:0006312 mitotic recombination Biological Process

GO:0007004 telomere maintenance via telomerase Biological Process

GO:0007140 male meiotic nuclear division Biological Process

GO:0010224 response to UV-B Biological Process

GO:0033260 nuclear DNA replication Biological Process

GO:0051321 meiotic cell cycle Biological Process

GO:0000785 chromatin Cellular Component

KEGG gene cross-reference

ath:AT5G08020

ath:AT5G45400

ath:AT5G61000

dosa:Os03g0214100

spo:2541158

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.952

Rank 1 · LXL04_037670 · OH-1004

Cytoplasm0.113

Rank 2 · LXL04_037670 · OH-1004

Cell membrane0.023

Rank 3 · LXL04_037670 · OH-1004

Mitochondrion0.013

Rank 4 · LXL04_037670 · OH-1004

Endoplasmic reticulum0.010

Rank 5 · LXL04_037670 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02721.22DUF22329-131 aa

PF16900.12REPA_OB_2158-231 aa

PF08646.17Rep_fac-A_C304-406 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037670	`PF02721.22`	DUF223	29	131	1.3e-11	45.4
LXL04_037670	`PF16900.12`	REPA_OB_2	158	231	3.5e-06	27.6
LXL04_037670	`PF08646.17`	Rep_fac-A_C	304	406	4.4e-11	43.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SD82`	Arabidopsis thaliana	Replication protein A 70 kDa DNA-binding subunit B	24.107%	Swiss-Prot	weak database homology
`Q9FME0`	Arabidopsis thaliana	Replication protein A 70 kDa DNA-binding subunit D	23.923%	Swiss-Prot	weak database homology
`Q9FHJ6`	Arabidopsis thaliana	Replication protein A 70 kDa DNA-binding subunit C	24.267%	Swiss-Prot	weak database homology
`Q10Q08`	Oryza sativa subsp. japonica	Replication protein A 70 kDa DNA-binding subunit B	23.342%	Swiss-Prot	weak database homology

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