LXL04_037293 | RubberDandelionOmics

Gene overview

LXL04_037293

Reference: OH-1004 Chr: Chr09 Coordinates: 5265874-5267157 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1140 bp · LXL04_037293|LXL04_037293|OH1004|cDNA

ATGGCATCCTCTGTATTTTCTACACATGGCACCACACGATTTCCTGAAGGAAGGAACATCTTTGGTGATTCAAATAAGTCAAATCTCTTCCATTACAAGAAAAACCATTCACCAGCTACCTTAACACACTCAAGTCTGTTATCCAAAAACAGAATCCAATGTAGGGCAATAGAGGTCCAAACCAACCACACCTTCTTAAAGGGAGACAAATTTCAACTTGAAGATGTGATTGAGGCACAACAATTTGACAGAGATACCCT...

CDS

Download CDS FASTA

1140 bp · LXL04_037293|LXL04_037293|OH1004|CDS

ATGGCATCCTCTGTATTTTCTACACATGGCACCACACGATTTCCTGAAGGAAGGAACATCTTTGGTGATTCAAATAAGTCAAATCTCTTCCATTACAAGAAAAACCATTCACCAGCTACCTTAACACACTCAAGTCTGTTATCCAAAAACAGAATCCAATGTAGGGCAATAGAGGTCCAAACCAACCACACCTTCTTAAAGGGAGACAAATTTCAACTTGAAGATGTGATTGAGGCACAACAATTTGACAGAGATACCCT...

Protein

Download Protein FASTA

379 aa · LXL04_037293|LXL04_037293|OH1004|PROTEIN

MASSVFSTHGTTRFPEGRNIFGDSNKSNLFHYKKNHSPATLTHSSLLSKNRIQCRAIEVQTNHTFLKGDKFQLEDVIEAQQFDRDTLSAIFKVAREMETIEKNSHGSQLLNGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDSIRTVEGYSDIIVMRHFESGAARRAAMTANIPVINAGDGPGQHPTQALLDMYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYDNVKVYFVSPQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037293`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037293

Location Chr09:5265874-5267157 (+)

Description Similar to PYRB2: Aspartate carbamoyltransferase 2, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g20330`	Catalyzes the condensation of carbamoyl phosphate and aspartate to form carbamoyl aspartate and inorganic phosphate, the committed step in the de novo pyrimidine nucleotide biosynthesis pathway.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0248800`	Catalyzes the condensation of carbamoyl phosphate and aspartate to form carbamoyl aspartate and inorganic phosphate, the committed step in the de novo pyrimidine nucleotide biosynthesis pathway.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_037293 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process Biological Process

GO:0006520 amino acid metabolic process Biological Process

GO:0006541 glutamine metabolic process Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0044205 'de novo' UMP biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0004070 aspartate carbamoyltransferase activity Molecular Function

GO:0016597 amino acid binding Molecular Function

KEGG gene cross-reference

ath:AT3G20330

dosa:Os08g0248800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.970

Rank 1 · LXL04_037293 · OH-1004

Mitochondrion0.054

Rank 2 · LXL04_037293 · OH-1004

Cytoplasm0.018

Rank 3 · LXL04_037293 · OH-1004

Nucleus0.014

Rank 4 · LXL04_037293 · OH-1004

Peroxisome0.010

Rank 5 · LXL04_037293 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02729.27OTCace_N75-216 aa

PF00185.31OTCace223-374 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037293	`PF02729.27`	OTCace_N	75	216	3.4e-46	157.7
LXL04_037293	`PF00185.31`	OTCace	223	374	6.9e-33	114.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P49077`	Arabidopsis thaliana	Aspartate carbamoyltransferase, chloroplastic	73.098%	Swiss-Prot	strong database homology
`Q9LD61`	Oryza sativa subsp. japonica	Aspartate carbamoyltransferase, chloroplastic	80.831%	Swiss-Prot	strong database homology

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