LXL04_037276 | RubberDandelionOmics

Gene overview

LXL04_037276

Reference: OH-1004 Chr: Chr09 Coordinates: 4918533-4923317 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2133 bp · LXL04_037276|LXL04_037276|OH1004|cDNA

caGATGTACAGACCTCACTAAACACCAATCAGTTTCACAATTATCTAATTCGGGTCTGCCATGGATTCCGGGAGCCAAGATGAAATCGAGGATTTGTCAACTTTATCTCCTCCTCCATTGGGTCCCTTACAGATAACAGGCAACAACAATGGGTTTGTTCATGACTTCGATCTCATGGCTGCTCAAACTTACCTCAGAAACAGATCAAGCTCACAGATCGATATCCAAGACGACACATTCCCGACTAAAGATCGCCCACT...

CDS

Download CDS FASTA

2073 bp · LXL04_037276|LXL04_037276|OH1004|CDS

ATGGATTCCGGGAGCCAAGATGAAATCGAGGATTTGTCAACTTTATCTCCTCCTCCATTGGGTCCCTTACAGATAACAGGCAACAACAATGGGTTTGTTCATGACTTCGATCTCATGGCTGCTCAAACTTACCTCAGAAACAGATCAAGCTCACAGATCGATATCCAAGACGACACATTCCCGACTAAAGATCGCCCACTTCCCATTTTTCTTAAGTTTGAAGATATAGAGTTTAAGGTGAAAGTGAGCAAAGCAACACC...

Protein

Download Protein FASTA

690 aa · LXL04_037276|LXL04_037276|OH1004|PROTEIN

MDSGSQDEIEDLSTLSPPPLGPLQITGNNNGFVHDFDLMAAQTYLRNRSSSQIDIQDDTFPTKDRPLPIFLKFEDIEFKVKVSKATPGNPVKAVMSRIVLKPKTEEDNYKQILKGITGSLGPGEILALMGPSGSGKTTLLKVIGGRLGENVKGTVTYNDVPYSPALKRRIGFVTQDDVLYPQLTVEETLIFAASLRLSGTMSQKQKYERVEVILKELGLERCRKTRVGGGFISGISGGERKRTSIGYEILVDPSLLLLDE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037276`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037276

Location Chr09:4918533-4923317 (-)

Description Similar to ABCG26: ABC transporter G family member 26

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g13220`	Mediates the transport of sporopollenin precursors (e.g. polyketides) across the tapetum plasma membrane into the anther locule for polymerization on developing microspore walls, thus being required for male fertility and pollen exine formation and patterning prior to tapetum programmed cell death.	ATP-binding cassette transporter G26 is required for male fertility and pollen exine formation in Arabidopsis.2010 · DOI: 10.1104/pp.110.161968 WBC27, an adenosine tri-phosphate-binding cassette protein, controls pollen wall formation and patterning in Arabidopsis.2011 · DOI: 10.1111/j.1744-7909.2010.01010.x An ABCG/WBC-type ABC transporter is essential for transport of sporopollenin precursors for exine formation in developing pollen.2011 · DOI: 10.1111/j.1365-313x.2010.04412.x Arabidopsis mutant of AtABCG26, an ABC transporter gene, is defective in pollen maturation.2011 · DOI: 10.1016/j.jplph.2011.05.014 ABCG26-mediated polyketide trafficking and hydroxycinnamoyl spermidines contribute to pollen wall exine formation in Arabidopsis.2014 · DOI: 10.1105/tpc.114.130484
`At5g06530`	ABC transporter G family member 22.	No verified direct reference in this release
`At3g52310`	ABC transporter G family member 27.	No verified direct reference in this release
`At1g31770`	Positive regulator of plant growth which acts as an efflux pump involved in the major root-to-shoot (acropetal) long-distance cytokinin (CK) transport via the xylem sap.	ABCG9, ABCG11 and ABCG14 ABC transporters are required for vascular development in Arabidopsis.2013 · DOI: 10.1111/tpj.12334 Arabidopsis ABCG14 protein controls the acropetal translocation of root-synthesized cytokinins.2014 · DOI: 10.1038/ncomms4274 Arabidopsis ABCG14 is essential for the root-to-shoot translocation of cytokinin.2014 · DOI: 10.1073/pnas.1321519111 Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.2016 · DOI: 10.1104/pp.16.00415 A Role of Cytokinin Transporter in Arabidopsis Immunity.2017 · DOI: 10.1094/mpmi-01-17-0011-r
`At3g25620`	ABC transporter G family member 21.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037276 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009414 response to water deprivation Biological Process

GO:0009555 pollen development Biological Process

GO:0009736 cytokinin-activated signaling pathway Biological Process

GO:0010115 regulation of abscisic acid biosynthetic process Biological Process

GO:0010148 transpiration Biological Process

GO:0010152 pollen maturation Biological Process

GO:0010184 cytokinin transport Biological Process

GO:0010222 stem vascular tissue pattern formation Biological Process

GO:0010584 pollen exine formation Biological Process

GO:0010588 cotyledon vascular tissue pattern formation Biological Process

GO:0030638 polyketide metabolic process Biological Process

GO:0042542 response to hydrogen peroxide Biological Process

KEGG gene cross-reference

ath:AT1G31770

ath:AT3G13220

ath:AT3G25620

ath:AT5G06530

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.766

Rank 1 · LXL04_037276 · OH-1004

Cytoplasm0.135

Rank 2 · LXL04_037276 · OH-1004

Endoplasmic reticulum0.087

Rank 3 · LXL04_037276 · OH-1004

Lysosome / Vacuole0.072

Rank 4 · LXL04_037276 · OH-1004

Golgi apparatus0.055

Rank 5 · LXL04_037276 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00005.34ABC_tran113-263 aa

PF13304.13AAA_21253-290 aa

PF19055.7ABC2_membrane_7292-353 aa

PF01061.30ABC2_membrane420-628 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037276	`PF00005.34`	ABC_tran	113	263	1.8e-29	103.8
LXL04_037276	`PF13304.13`	AAA_21	253	290	3.2e-08	34.6
LXL04_037276	`PF19055.7`	ABC2_membrane_7	292	353	1e-09	38.5
LXL04_037276	`PF01061.30`	ABC2_membrane	420	628	5.5e-43	147.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LK50`	Arabidopsis thaliana	ABC transporter G family member 26	70.833%	Swiss-Prot	strong database homology
`Q93YS4`	Arabidopsis thaliana	ABC transporter G family member 22	44.923%	Swiss-Prot	moderate database homology
`Q9FT51`	Arabidopsis thaliana	ABC transporter G family member 27	44.031%	Swiss-Prot	moderate database homology
`Q9C6W5`	Arabidopsis thaliana	ABC transporter G family member 14	44.160%	Swiss-Prot	moderate database homology
`Q7XA72`	Arabidopsis thaliana	ABC transporter G family member 21	44.444%	Swiss-Prot	moderate database homology

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