LXL04_037264 | RubberDandelionOmics

Gene overview

LXL04_037264

Reference: OH-1004 Chr: Chr09 Coordinates: 4712541-4713944 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1074 bp · LXL04_037264|LXL04_037264|OH1004|cDNA

ATGTCAGCCTTCGTCGGAAAGTACGCCGATGAGTTAATCAAGAATGCCAAGTACATCGCCACACCGGGGAAGGGTATATTGGCGGCGGATGAAAGCACCGGAACCATCGGAAAACGTCTCTCGAGCATCAACGTCGAAAACGTCGAGTCAAACCGCCAAGCTCTTCGTGAACTCCTCTTCACAGCTCCGAACGCAGTGACTTACCTCTCCGGCGTCATTCTCTTCGAAGAAACTCTTTACCAGAAGACCGCCGACGGGAA...

CDS

Download CDS FASTA

1074 bp · LXL04_037264|LXL04_037264|OH1004|CDS

ATGTCAGCCTTCGTCGGAAAGTACGCCGATGAGTTAATCAAGAATGCCAAGTACATCGCCACACCGGGGAAGGGTATATTGGCGGCGGATGAAAGCACCGGAACCATCGGAAAACGTCTCTCGAGCATCAACGTCGAAAACGTCGAGTCAAACCGCCAAGCTCTTCGTGAACTCCTCTTCACAGCTCCGAACGCAGTGACTTACCTCTCCGGCGTCATTCTCTTCGAAGAAACTCTTTACCAGAAGACCGCCGACGGGAA...

Protein

Download Protein FASTA

357 aa · LXL04_037264|LXL04_037264|OH1004|PROTEIN

MSAFVGKYADELIKNAKYIATPGKGILAADESTGTIGKRLSSINVENVESNRQALRELLFTAPNAVTYLSGVILFEETLYQKTADGKPFVDVLLEANVLPGIKVDKGVVDLSGTNGETTTQGLDGLGARCAKYYEAGARFAKWRAVLKIGATEPSELSIQQNAQGLARYAIICQENGLVPIVEPEILTDGSHDIKKCAYATEMVLAAVYKALNEQHVLLEGTLLKPNMVTPGSDSPKVAPEVIAEYTVTALRRTVPAAVP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037264`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037264

Location Chr09:4712541-4713944 (-)

Description Similar to FBA5: Fructose-bisphosphate aldolase 5, cytosolic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g26530`	Fructose-bisphosphate aldolase that plays a key role in glycolysis and gluconeogenesis.	No verified direct reference in this release
`At4g26520`	Plays a key role in glycolysis and gluconeogenesis.	No verified direct reference in this release
`At2g36460`	Fructose-bisphosphate aldolase that plays a key role in glycolysis and gluconeogenesis.	Regulation of plant cytosolic aldolase functions by redox-modifications.2011 · DOI: 10.1016/j.plaphy.2011.06.009 Transfer of a Redox-Signal through the Cytosol by Redox-Dependent Microcompartmentation of Glycolytic Enzymes at Mitochondria and Actin Cytoskeleton.2012 · DOI: 10.3389/fpls.2012.00284

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0905800`	Fructose-bisphosphate aldolase that plays a key role in glycolysis and gluconeogenesis.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037264 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0001666 response to hypoxia Biological Process

GO:0006094 gluconeogenesis Biological Process

GO:0006096 glycolytic process Biological Process

GO:0030388 fructose 1,6-bisphosphate metabolic process Biological Process

GO:0031930 mitochondria-nucleus signaling pathway Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT2G36460

ath:AT4G26520

ath:AT4G26530

dosa:Os01g0905800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.819

Rank 1 · LXL04_037264 · OH-1004

Nucleus0.278

Rank 2 · LXL04_037264 · OH-1004

Mitochondrion0.085

Rank 3 · LXL04_037264 · OH-1004

Cell membrane0.063

Rank 4 · LXL04_037264 · OH-1004

Endoplasmic reticulum0.057

Rank 5 · LXL04_037264 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00274.26Glycolytic11-357 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037264	`PF00274.26`	Glycolytic	11	357	2e-174	580.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O65581`	Arabidopsis thaliana	Fructose-bisphosphate aldolase 5, cytosolic	85.475%	Swiss-Prot	strong database homology
`P22197`	Arabidopsis thaliana	Fructose-bisphosphate aldolase 7, cytosolic	79.609%	Swiss-Prot	strong database homology
`Q9SJQ9`	Arabidopsis thaliana	Fructose-bisphosphate aldolase 6, cytosolic	78.771%	Swiss-Prot	strong database homology
`Q5N725`	Oryza sativa subsp. japonica	Fructose-bisphosphate aldolase 3, cytoplasmic	79.330%	Swiss-Prot	strong database homology

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