Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1035 bp · LXL04_037260|LXL04_037260|OH1004|cDNA
ATGGCAGAAATTGCAGGAAAGCAAACACATCTTATGTCGATGAATACAAGTAATATGAAGGAAAAATGGGTGAAACATTACTCCTCAAATCACCAGATATTGCTGGTTGGAGAAGGAGACTTCTCTTTTTCGCTGAGTTTGGCTATGGCTTTCGGCTCTGCTTCAAACCTTGTGGCATCCTCTCTCGATTCTTATGATGTTCTTATCAAGAAGTACAATGGCGTAAAATCAAACTTGGAAATCCTACGCCATTTTGGAGC...
1035 bp · LXL04_037260|LXL04_037260|OH1004|CDS
ATGGCAGAAATTGCAGGAAAGCAAACACATCTTATGTCGATGAATACAAGTAATATGAAGGAAAAATGGGTGAAACATTACTCCTCAAATCACCAGATATTGCTGGTTGGAGAAGGAGACTTCTCTTTTTCGCTGAGTTTGGCTATGGCTTTCGGCTCTGCTTCAAACCTTGTGGCATCCTCTCTCGATTCTTATGATGTTCTTATCAAGAAGTACAATGGCGTAAAATCAAACTTGGAAATCCTACGCCATTTTGGAGC...
Protein
Download Protein FASTA344 aa · LXL04_037260|LXL04_037260|OH1004|PROTEIN
MAEIAGKQTHLMSMNTSNMKEKWVKHYSSNHQILLVGEGDFSFSLSLAMAFGSASNLVASSLDSYDVLIKKYNGVKSNLEILRHFGAQLLHGVDSLNMKFHIDLSTRKFDRIVYNFPHAGFLGKETDHLVIMIHRNLIRGFFMNAIDMLLPNGEIHVTHKTAHPFDTWNIEELATQSCLTLLESVEFKIEDYPGYNNKRGDGTNPNKSFPLGKCSTFKFILSSKTKKSITSDKNPREPQKIPLKRENVEEILNPSKDMMK...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_037260 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_037260 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr09:4450034-4453539 (+) | |||||||||
| Description | Similar to HIPP41: Heavy metal-associated isoprenylated plant protein 41 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0070475 rRNA base methylation Biological Process GO:0005634 nucleus Cellular Component GO:0005730 nucleolus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0046872 metal ion binding Molecular Function GO:0070042 rRNA (uridine-N3-)-methyltransferase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G55790 ath:AT4G26485 hsa:91893 mmu:382137 spo:2539319 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF10354.16BMT5-like34-199 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_037260 | PF10354.16 | BMT5-like | 34 | 199 | 4.4e-53 | 180.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.