LXL04_037244 | RubberDandelionOmics

Gene overview

LXL04_037244

Reference: OH-1004 Chr: Chr09 Coordinates: 4143989-4145277 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

687 bp · LXL04_037244|LXL04_037244|OH1004|cDNA

ATGGGCGGTAAGTTGACCAAGGGCGATGAATCACCAATGACTTCGGCACCTACAAGAAAACTTGAAGCCAAAATTCTCAAAACAATGCGTAGCAGAGAATCTCAAGGAACTTCCATGAAATCCTTCAATACAATAATTCTTAAATTCCCCAAAATTGATGCGAGCCTGCGCAAATGCAAAGCTATATTTGAACAATTTGATGAAGATAAAAGTGGTTCGATTGATCCAAAAGAGCTTAATCATTGCTTCCGTGAGTTGCA...

CDS

Download CDS FASTA

687 bp · LXL04_037244|LXL04_037244|OH1004|CDS

ATGGGCGGTAAGTTGACCAAGGGCGATGAATCACCAATGACTTCGGCACCTACAAGAAAACTTGAAGCCAAAATTCTCAAAACAATGCGTAGCAGAGAATCTCAAGGAACTTCCATGAAATCCTTCAATACAATAATTCTTAAATTCCCCAAAATTGATGCGAGCCTGCGCAAATGCAAAGCTATATTTGAACAATTTGATGAAGATAAAAGTGGTTCGATTGATCCAAAAGAGCTTAATCATTGCTTCCGTGAGTTGCA...

Protein

Download Protein FASTA

228 aa · LXL04_037244|LXL04_037244|OH1004|PROTEIN

MGGKLTKGDESPMTSAPTRKLEAKILKTMRSRESQGTSMKSFNTIILKFPKIDASLRKCKAIFEQFDEDKSGSIDPKELNHCFRELQIDFTDAEINDIFQECDINDDMGINFKEFIVLLCLVYLLKKDRSSSCMGIPDLETAFETMVDSFVFLDKNKDGYVSKDEMVRAINETTAGERSSGRIAMRRFEEMDWDKNGMVNFKEFLFAFTKWIGLEDADDDDEEEETNE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037244`
TK1151 ID	TkA04G263990
OH-1004 ID	LXL04_037244
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037244

Location Chr09:4143989-4145277 (+)

Description Similar to CML21: Probable calcium-binding protein CML21

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g26470`	Potential calcium sensor.	No verified direct reference in this release
`At3g24110`	Potential calcium sensor.	No verified direct reference in this release
`At4g04740`	May play a role in signal transduction pathways that involve calcium as a second messenger.	AtCPK23 functions in Arabidopsis responses to drought and salt stresses.2007 · DOI: 10.1007/s11103-007-9187-2

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037244 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009737 response to abscisic acid Biological Process

GO:0010119 regulation of stomatal movement Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016460 myosin II complex Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004683 calcium/calmodulin-dependent protein kinase activity Molecular Function

GO:0005509 calcium ion binding Molecular Function

GO:0005516 calmodulin binding Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT3G24110

ath:AT4G04740

ath:AT4G26470

pfa:PF3D7_1434200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.424

Rank 1 · LXL04_037244 · OH-1004

Cytoplasm0.422

Rank 2 · LXL04_037244 · OH-1004

Nucleus0.240

Rank 3 · LXL04_037244 · OH-1004

Golgi apparatus0.059

Rank 4 · LXL04_037244 · OH-1004

Endoplasmic reticulum0.056

Rank 5 · LXL04_037244 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13499.13EF-hand_758-116 aa

PF00036.39EF-hand_159-85 aa

PF13405.13EF-hand_660-86 aa

PF13202.13EF-hand_560-81 aa

PF13833.13EF-hand_871-119 aa

PF13499.13EF-hand_7144-208 aa

PF13202.13EF-hand_5147-168 aa

PF13405.13EF-hand_6148-171 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037244	`PF13499.13`	EF-hand_7	58	116	9.4e-20	71.5
LXL04_037244	`PF00036.39`	EF-hand_1	59	85	1.9e-20	71.6
LXL04_037244	`PF13405.13`	EF-hand_6	60	86	4.6e-19	67.0
LXL04_037244	`PF13202.13`	EF-hand_5	60	81	8.9e-13	47.8
LXL04_037244	`PF13833.13`	EF-hand_8	71	119	4.7e-09	36.6
LXL04_037244	`PF13499.13`	EF-hand_7	144	208	9.4e-20	71.5
LXL04_037244	`PF13202.13`	EF-hand_5	147	168	8.9e-13	47.8
LXL04_037244	`PF13405.13`	EF-hand_6	148	171	4.6e-19	67.0
LXL04_037244	`PF00036.39`	EF-hand_1	150	171	1.9e-20	71.6
LXL04_037244	`PF00036.39`	EF-hand_1	186	210	1.9e-20	71.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q52K82`	Arabidopsis thaliana	Probable calcium-binding protein CML21	66.055%	Swiss-Prot	strong database homology
`Q9LRN6`	Arabidopsis thaliana	Probable calcium-binding protein CML22	43.062%	Swiss-Prot	moderate database homology
`Q9M101`	Arabidopsis thaliana	Calcium-dependent protein kinase 23	25.871%	Swiss-Prot	weak database homology

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