LXL04_037237 | RubberDandelionOmics

Gene overview

LXL04_037237

Reference: OH-1004 Chr: Chr09 Coordinates: 3855409-3858329 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1446 bp · LXL04_037237|LXL04_037237|OH1004|cDNA

ATGGCGTATTTCTTGAAGAGGATTTTGGAATCTGCAAATCTCTTGAATTCGAGTAGTTCCAGTTCAAGCTCATCACTGAATTCGAACTTCTCGATTTCAAGTCATGCATCTGCTTCAGATCAGATTCTCATGTGTTCGTCGTCGACTGGGGAATTTGATCGAATACCTATCGATATTTTTATGCAAATTCTGAAATTACTTGGACCTAAAGAGTCTGCTAAGCTCGTAATTATCTGCAAATCATGGAAAGTAATCGTCTC...

CDS

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1446 bp · LXL04_037237|LXL04_037237|OH1004|CDS

ATGGCGTATTTCTTGAAGAGGATTTTGGAATCTGCAAATCTCTTGAATTCGAGTAGTTCCAGTTCAAGCTCATCACTGAATTCGAACTTCTCGATTTCAAGTCATGCATCTGCTTCAGATCAGATTCTCATGTGTTCGTCGTCGACTGGGGAATTTGATCGAATACCTATCGATATTTTTATGCAAATTCTGAAATTACTTGGACCTAAAGAGTCTGCTAAGCTCGTAATTATCTGCAAATCATGGAAAGTAATCGTCTC...

Protein

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481 aa · LXL04_037237|LXL04_037237|OH1004|PROTEIN

MAYFLKRILESANLLNSSSSSSSSSLNSNFSISSHASASDQILMCSSSTGEFDRIPIDIFMQILKLLGPKESAKLVIICKSWKVIVSCNNLWIYYLQNKRDPWDAMFFAETSLRSGFPLRTYPSQMQSFMQIYGQRAQVPGAIIIDGGSGYCKFGWSKYGSPSGRASTFMEFGNIESPVYSRLRHFFATMYSRMQVKSSSQPTVVSIPISQYGDRKAAKIARRQLKEAIYSALFDMNVPSVCAINQATLALFAAKKTSGI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037237`
TK1151 ID	TkA04G262920
OH-1004 ID	LXL04_037237
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037237

Location Chr09:3855409-3858329 (+)

Description Similar to ARP8: Actin-related protein 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g56180`	Actin-related protein 8.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0667700`	Actin-related protein 8.	No verified direct reference in this release
`UniProt: A8WAT2`	Actin-related protein 8.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_037237 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0030029 actin filament-based process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005856 cytoskeleton Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0015629 actin cytoskeleton Cellular Component

GO:0030427 site of polarized growth Cellular Component

GO:0051286 cell tip Cellular Component

GO:0005200 structural constituent of cytoskeleton Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016787 hydrolase activity Molecular Function

KEGG gene cross-reference

ath:AT5G56180

dosa:Os04g0667700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.465

Rank 1 · LXL04_037237 · OH-1004

Cytoplasm0.420

Rank 2 · LXL04_037237 · OH-1004

Cell membrane0.090

Rank 3 · LXL04_037237 · OH-1004

Mitochondrion0.077

Rank 4 · LXL04_037237 · OH-1004

Lysosome / Vacuole0.041

Rank 5 · LXL04_037237 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00022.27Actin222-316 aa

PF00022.27Actin312-471 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037237	`PF00022.27`	Actin	222	316	4.2e-40	138.3
LXL04_037237	`PF00022.27`	Actin	312	471	4.2e-40	138.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FKT0`	Arabidopsis thaliana	Actin-related protein 8	63.297%	Swiss-Prot	strong database homology
`Q7XR80`	Oryza sativa subsp. japonica	Actin-related protein 8	58.161%	Swiss-Prot	strong database homology
`A8WAT2`	Oryza sativa subsp. indica	Actin-related protein 8	58.161%	Swiss-Prot	strong database homology

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