Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1935 bp · LXL04_037222|LXL04_037222|OH1004|cDNA
ATGTTCAAAACTACAAGGACGAGAACTGCTAATATTAATAAATCTCATCAGGGGAGAAAGAGGTCAAGTCTCAAGTGGAGGGAAAGACGCTCATTCCATGATATGGCTCACAAGACCACCACCACTAGGACCACCGACGTCACCGCCACTAGAGGCGGCGATAGCTTACTAGAAAGGATACCGGAGAACTTACTGAATGAAATATTCGTAAAGCTGGAACAGGAAAAGCTGTCGACGCTCTGCTCATTATTATGCGTTTC...
1935 bp · LXL04_037222|LXL04_037222|OH1004|CDS
ATGTTCAAAACTACAAGGACGAGAACTGCTAATATTAATAAATCTCATCAGGGGAGAAAGAGGTCAAGTCTCAAGTGGAGGGAAAGACGCTCATTCCATGATATGGCTCACAAGACCACCACCACTAGGACCACCGACGTCACCGCCACTAGAGGCGGCGATAGCTTACTAGAAAGGATACCGGAGAACTTACTGAATGAAATATTCGTAAAGCTGGAACAGGAAAAGCTGTCGACGCTCTGCTCATTATTATGCGTTTC...
Protein
Download Protein FASTA644 aa · LXL04_037222|LXL04_037222|OH1004|PROTEIN
MFKTTRTRTANINKSHQGRKRSSLKWRERRSFHDMAHKTTTTRTTDVTATRGGDSLLERIPENLLNEIFVKLEQEKLSTLCSLLCVSRTLESSVNTALSTFSSVDLSEFSVDPQTFDKIRRKLGNIQKLTLDCLRLTDSSIRNFIGPDVEELNLLKCSSLSYKLLSSIGITCPNLRVLTLEFSGIIDKSTVFDLYFKSSFENCRFLESLKIKIRGGDINDYSFMLLGIYNSLPKTIKFLKLQPASSLDTLVFFRTLPIPA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_037222 |
|---|---|
| TK1151 ID | TkA04G258970 |
| OH-1004 ID | LXL04_037222 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.700 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 94.720Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_037222 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr09:3438006-3440234 (-) | |||||||||
| Description | Similar to ATB: F-box protein At-B | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0003341 cilium movement Biological Process GO:0006511 ubiquitin-dependent protein catabolic process Biological Process GO:0010824 regulation of centrosome duplication Biological Process GO:0030317 flagellated sperm motility Biological Process GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process GO:0005634 nucleus Cellular Component GO:0005813 centrosome Cellular Component GO:0005829 cytosol Cellular Component GO:0005930 axoneme Cellular Component GO:0019005 SCF ubiquitin ligase complex Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G55590 ath:AT2G17020 hsa:222235 hsa:84961 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF29594.1LRR_SKP297-182 aaPF25372.2LRR_FBXL15104-637 aaPF29594.1LRR_SKP2351-446 aaPF29594.1LRR_SKP2425-564 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_037222 | PF29594.1 | LRR_SKP2 | 97 | 182 | 2e-13 | 51.0 |
| LXL04_037222 | PF25372.2 | LRR_FBXL15 | 104 | 637 | 4.8e-148 | 494.7 |
| LXL04_037222 | PF29594.1 | LRR_SKP2 | 351 | 446 | 2e-13 | 51.0 |
| LXL04_037222 | PF29594.1 | LRR_SKP2 | 425 | 564 | 2e-13 | 51.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.