LXL04_037118 | RubberDandelionOmics

Gene overview

LXL04_037118

Reference: OH-1004 Chr: Chr08 Coordinates: 53597304-53598345 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

639 bp · LXL04_037118|LXL04_037118|OH1004|cDNA

ATGGAGTTCAACAATGAAGAAGCCGGATGTATTGGAATTGAGAAGTCACCCTTCACTATATTCGAAACGAGTGGAATTGGCCTGAACGCGAGGAACATCACTCGGATTTTAGCCACCACTACCGTTATTGTGGGCTTAGAAGAAATGGAGAAGGGCCACGGGTTTTCACTTTCCTCTCTCTATTTTAAGGGCATATTCAGCGTTGATGGAGTAAATCCGTTATCCATGGTTTTAGAAACTGATTTGGTTTCCTTGAATGA...

CDS

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639 bp · LXL04_037118|LXL04_037118|OH1004|CDS

ATGGAGTTCAACAATGAAGAAGCCGGATGTATTGGAATTGAGAAGTCACCCTTCACTATATTCGAAACGAGTGGAATTGGCCTGAACGCGAGGAACATCACTCGGATTTTAGCCACCACTACCGTTATTGTGGGCTTAGAAGAAATGGAGAAGGGCCACGGGTTTTCACTTTCCTCTCTCTATTTTAAGGGCATATTCAGCGTTGATGGAGTAAATCCGTTATCCATGGTTTTAGAAACTGATTTGGTTTCCTTGAATGA...

Protein

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212 aa · LXL04_037118|LXL04_037118|OH1004|PROTEIN

MEFNNEEAGCIGIEKSPFTIFETSGIGLNARNITRILATTTVIVGLEEMEKGHGFSLSSLYFKGIFSVDGVNPLSMVLETDLVSLNERSLKLIKVIASTTGHGFNLDSRKSQAWRRYQATKWLKSFVGSVGILKQPSEKEFISCLRKGLILCNAINEIQPGSVPRYKLYCLYCVLYRCSIVLYCLLIIDLGFENLLKAVEGLNLPILERLNN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037118`
TK1151 ID	TkA05G419740
OH-1004 ID	LXL04_037118
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	80.000
Protein coverage (%)	TK1151 66.667 / OH-1004 45.755 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037118

Location Chr08:53597304-53598345 (-)

Description Similar to KIN14L: Kinesin-like protein KIN-14L

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g10310`	Kinesin-like protein KIN-14L.	No verified direct reference in this release
`At1g09170`	Kinesin-like protein KIN-14H.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0243100`	Kinesin-like protein KIN-14A.	No verified direct reference in this release
`Os12g0547500`	Minus end-directed motor protein that transports actin filaments along microtubules.	Dynamic bridges--a calponin-domain kinesin from rice links actin filaments and microtubules in both cycling and non-cycling cells.2009 · DOI: 10.1093/pcp/pcp094 A kinesin with calponin-homology domain is involved in premitotic nuclear migration.2010 · DOI: 10.1093/jxb/erq164 The non-processive rice kinesin-14 OsKCH1 transports actin filaments along microtubules with two distinct velocities.2015 · DOI: 10.1038/nplants.2015.111
`Os11g0672400`	Kinesin-like protein KIN-14P.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_037118 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007017 microtubule-based process Biological Process

GO:0007018 microtubule-based movement Biological Process

GO:0007097 nuclear migration Biological Process

GO:0031534 minus-end directed microtubule sliding Biological Process

GO:0051647 nucleus localization Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005874 microtubule Cellular Component

GO:0015629 actin cytoskeleton Cellular Component

GO:0015630 microtubule cytoskeleton Cellular Component

GO:0003777 microtubule motor activity Molecular Function

GO:0003779 actin binding Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G09170

dosa:Os01g0243100

dosa:Os12g0547500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.436

Rank 1 · LXL04_037118 · OH-1004

Nucleus0.301

Rank 2 · LXL04_037118 · OH-1004

Mitochondrion0.137

Rank 3 · LXL04_037118 · OH-1004

Cell membrane0.112

Rank 4 · LXL04_037118 · OH-1004

Golgi apparatus0.091

Rank 5 · LXL04_037118 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4J2M6`	Arabidopsis thaliana	Kinesin-like protein KIN-14L	61.429%	Swiss-Prot	weak database homology
`F4HZF0`	Arabidopsis thaliana	Kinesin-like protein KIN-14H	42.593%	Swiss-Prot	weak database homology
`B9EUM5`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-14A	40.741%	Swiss-Prot	weak database homology
`Q0IMS9`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-14Q	37.069%	Swiss-Prot	moderate database homology
`B9G8P1`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-14P	46.970%	Swiss-Prot	weak database homology

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