Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1032 bp · LXL04_037003|LXL04_037003|OH1004|cDNA
ATGGTTCCTTGGGGAGGAGTCACTTGTTGTTTGAGTGCCGCCGCTCTTTATCTTCTTGGACGAAGTAGCGGAAAGGACGCAGAGGTTCTCAAATCGGTAACTCGAGTTAATCAACTGAAGGATTTGGCTCAATTACTAGATGCTGCAAACAAAGTACTGCCTTTTGTCGTGACAATATCTGGAAGAGTTGGGTCAGATACTCCTATCAATTGCGAGTATAGTGGTTTGAGAGGAGTAATTGTGGAGGAAACGGCAGAGCA...
1032 bp · LXL04_037003|LXL04_037003|OH1004|CDS
ATGGTTCCTTGGGGAGGAGTCACTTGTTGTTTGAGTGCCGCCGCTCTTTATCTTCTTGGACGAAGTAGCGGAAAGGACGCAGAGGTTCTCAAATCGGTAACTCGAGTTAATCAACTGAAGGATTTGGCTCAATTACTAGATGCTGCAAACAAAGTACTGCCTTTTGTCGTGACAATATCTGGAAGAGTTGGGTCAGATACTCCTATCAATTGCGAGTATAGTGGTTTGAGAGGAGTAATTGTGGAGGAAACGGCAGAGCA...
Protein
Download Protein FASTA343 aa · LXL04_037003|LXL04_037003|OH1004|PROTEIN
MVPWGGVTCCLSAAALYLLGRSSGKDAEVLKSVTRVNQLKDLAQLLDAANKVLPFVVTISGRVGSDTPINCEYSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMCKEVPWFLDDESARVYVVGARGAAGLVLTIGSEVFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPTGTPLTVVGEAIKDDIGTVRIQRPLKGPFYVSHKTIDQLIANLGKWARWYKYASMSFAAFGFYLIAKHAFQYIMERKRHWELKKRV...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_037003 |
|---|---|
| TK1151 ID | TkA04G011250 |
| OH-1004 ID | LXL04_037003 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 69.679Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_037003 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr08:51544918-51548950 (+) | |||||||||
| Description | Similar to SP1: E3 ubiquitin-protein ligase SP1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000209 protein polyubiquitination Biological Process GO:0000266 mitochondrial fission Biological Process GO:0009658 chloroplast organization Biological Process GO:0009893 positive regulation of metabolic process Biological Process GO:0010637 negative regulation of mitochondrial fusion Biological Process GO:0010821 regulation of mitochondrion organization Biological Process GO:0016558 protein import into peroxisome matrix Biological Process GO:0016567 protein ubiquitination Biological Process GO:0016925 protein sumoylation Biological Process GO:0022603 regulation of anatomical structure morphogenesis Biological Process GO:0030162 regulation of proteolysis Biological Process GO:0031647 regulation of protein stability Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT1G59560 ath:AT1G63900 hsa:79594 xla:414680 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF12483.14GIDE86-235 aaPF13920.13zf-C3HC4_3294-336 aaPF14447.13Prok-RING_4296-335 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_037003 | PF12483.14 | GIDE | 86 | 235 | 1.5e-38 | 132.5 |
| LXL04_037003 | PF13920.13 | zf-C3HC4_3 | 294 | 336 | 1.9e-13 | 50.7 |
| LXL04_037003 | PF14447.13 | Prok-RING_4 | 296 | 335 | 4.2e-06 | 27.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.