LXL04_036993 | RubberDandelionOmics

Gene overview

LXL04_036993

Reference: OH-1004 Chr: Chr08 Coordinates: 51409548-51414455 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1602 bp · LXL04_036993|LXL04_036993|OH1004|cDNA

CTTAACAACTTTCAAAAAGAGCGAGCAGGACTGGCCCGCTTTTCGCGGTTAGAAGTGCACCGGTTCACCGAGGTTTTAAGCCAagtgttgttgttgttgcctCCAATTCTCAGAAACGCAGGTCTCCTCTTTGTCTCATCTTCTTACTTCATAAACCTCGTGGCTCTCACTGAATTCGAAACAACTACACCAATGAATACATTAACCCTTGCCCTAGCCGCCGGTGCCGGACTTTCGAGGAGGTCTATAGTCACAGATTC...

CDS

Download CDS FASTA

1572 bp · LXL04_036993|LXL04_036993|OH1004|CDS

CTGGCCCGCTTTTCGCGGTTAGAAGTGCACCGGTTCACCGAGGTTTTAAGCCAAGTGTTGTTGTTGTTGCCTCCAATTCTCAGAAACGCAGGTCTCCTCTTTGTCTCATCTTCTTACTTCATAAACCTCGTGGCTCTCACTGAATTCGAAACAACTACACCAATGAATACATTAACCCTTGCCCTAGCCGCCGGTGCCGGACTTTCGAGGAGGTCTATAGTCACAGATTCAAACGATATTGAGTTCGGAAACCCTTGGTG...

Protein

Download Protein FASTA

523 aa · LXL04_036993|LXL04_036993|OH1004|PROTEIN

MARFSRLEVHRFTEVLSQVLLLLPPILRNAGLLFVSSSYFINLVALTEFETTTPMNTLTLALAAGAGLSRRSIVTDSNDIEFGNPWWFIYAGVSCALVLFAGIMSGLTLGLMSLGVVELEILHRSGTNKEKKQAAAILPVVQKQHQLLVTLLLCNAAAMEALPIYLDKIFHPAVAVLLSVTFVLIFGEVIPQAISTRYGLAVGANFVGLVRFLMIVCYPIAYPVGKVLDALIGHNDALFRRAQLKALVSIHGQEAGKGGE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036993`
TK1151 ID	TkA04G011710
OH-1004 ID	LXL04_036993
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 98.124 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036993

Location Chr08:51409548-51414455 (+)

Description Similar to CBSDUF4: Putative DUF21 domain-containing protein At1g03270

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g03270`	Putative DUF21 domain-containing protein At1g03270.	No verified direct reference in this release
`At4g14240`	DUF21 domain-containing protein At4g14240.	No verified direct reference in this release
`At4g14230`	DUF21 domain-containing protein At4g14230.	No verified direct reference in this release
`At4g33700`	DUF21 domain-containing protein At4g33700.	No verified direct reference in this release
`At2g14520`	DUF21 domain-containing protein At2g14520.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_036993 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010960 magnesium ion homeostasis Biological Process

GO:1902456 regulation of stomatal opening Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005774 vacuolar membrane Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G03270

ath:AT2G14520

ath:AT4G14230

ath:AT4G14240

ath:AT4G33700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.355

Rank 1 · LXL04_036993 · OH-1004

Endoplasmic reticulum0.214

Rank 2 · LXL04_036993 · OH-1004

Lysosome / Vacuole0.203

Rank 3 · LXL04_036993 · OH-1004

Golgi apparatus0.202

Rank 4 · LXL04_036993 · OH-1004

Cytoplasm0.162

Rank 5 · LXL04_036993 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01595.26CNNM94-264 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036993	`PF01595.26`	CNNM	94	264	2.2e-32	112.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZVS8`	Arabidopsis thaliana	Putative DUF21 domain-containing protein At1g03270	73.288%	Swiss-Prot	strong database homology
`Q67XQ0`	Arabidopsis thaliana	DUF21 domain-containing protein At4g14240	72.667%	Swiss-Prot	strong database homology
`Q4V3C7`	Arabidopsis thaliana	DUF21 domain-containing protein At4g14230	69.556%	Swiss-Prot	strong database homology
`Q8VZI2`	Arabidopsis thaliana	DUF21 domain-containing protein At4g33700	54.067%	Swiss-Prot	strong database homology
`Q9ZQR4`	Arabidopsis thaliana	DUF21 domain-containing protein At2g14520	52.555%	Swiss-Prot	strong database homology

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