LXL04_036949 | RubberDandelionOmics

Gene overview

LXL04_036949

Reference: OH-1004 Chr: Chr08 Coordinates: 50782884-50786094 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

993 bp · LXL04_036949|LXL04_036949|OH1004|cDNA

ATGGGATTGAGCAACGGAACCGTAGATACTTTGATGTCTGATTTCCTCCGCAAATCGGGTGGCGTGGCGGTTATTGACGGTGGATTTGCAACGGAGCTTGAAAGGCATGGCGCAGACCTTAACGATCCTCTCTGGAGCGCCAAGTGCCTCCTCACATCTCCGAACCTTGTTCGTCAGGTCCACCTTGATTATCTTGAAGCTGGTGCAGATATAATAATCACGGCATCTTATCAAGCAACAATTCAAGGGTTTGAAGCCAA...

CDS

Download CDS FASTA

993 bp · LXL04_036949|LXL04_036949|OH1004|CDS

ATGGGATTGAGCAACGGAACCGTAGATACTTTGATGTCTGATTTCCTCCGCAAATCGGGTGGCGTGGCGGTTATTGACGGTGGATTTGCAACGGAGCTTGAAAGGCATGGCGCAGACCTTAACGATCCTCTCTGGAGCGCCAAGTGCCTCCTCACATCTCCGAACCTTGTTCGTCAGGTCCACCTTGATTATCTTGAAGCTGGTGCAGATATAATAATCACGGCATCTTATCAAGCAACAATTCAAGGGTTTGAAGCCAA...

Protein

Download Protein FASTA

330 aa · LXL04_036949|LXL04_036949|OH1004|PROTEIN

MGLSNGTVDTLMSDFLRKSGGVAVIDGGFATELERHGADLNDPLWSAKCLLTSPNLVRQVHLDYLEAGADIIITASYQATIQGFEAKGFTKQEGEAMLKKSVDIAREARDIYNKKCGESSRPILVAASVGSYGAYLADGSEYSGDYGNAMNLEFLKSFHRRRVQVLAESCPDLIAFETIPNKLEAKAFAELLEEGIKIPAWFSFNSKDGVNVVSGDSLTECAKIADSCKKVVAVGINCTPPRFISGLILAIKKATSKPIL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036949`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036949

Location Chr08:50782884-50786094 (+)

Description Similar to HMT-2: Homocysteine S-methyltransferase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g63250`	Catalyzes methyl transfer from S-methylmethionine (SMM) to adenosyl-L-homocysteine (AdoMet).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036949 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009086 methionine biosynthetic process Biological Process

GO:0010269 response to selenium ion Biological Process

GO:0032259 methylation Biological Process

GO:0033528 S-methylmethionine cycle Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0008270 zinc ion binding Molecular Function

GO:0008898 S-adenosylmethionine-homocysteine S-methyltransferase activity Molecular Function

GO:0016205 selenocysteine methyltransferase activity Molecular Function

GO:0061627 S-methylmethionine-homocysteine S-methyltransferase activity Molecular Function

KEGG gene cross-reference

ag:AAX20123

ag:CAA10368

ath:AT3G63250

zma:541874

zma:541875

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.646

Rank 1 · LXL04_036949 · OH-1004

Nucleus0.309

Rank 2 · LXL04_036949 · OH-1004

Mitochondrion0.110

Rank 3 · LXL04_036949 · OH-1004

Cell membrane0.092

Rank 4 · LXL04_036949 · OH-1004

Endoplasmic reticulum0.061

Rank 5 · LXL04_036949 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02574.23S-methyl_trans24-319 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036949	`PF02574.23`	S-methyl_trans	24	319	3e-81	274.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M1W4`	Arabidopsis thaliana	Homocysteine S-methyltransferase 2	73.602%	Swiss-Prot	strong database homology

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