RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_036830
Reference: OH-1004 Chr: Chr08 Coordinates: 48938966-48945802 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2691 bp · LXL04_036830|LXL04_036830|OH1004|cDNA

ATGGGATTGCTCTTAGTCCTCCTCCTTATAATATCCCTcttttcatcttcttcttcaaaactAGAAGAAGCTGAAGCTCTACTTAAATGGAAAACCAGCCTCATAAACCAAAACAATCCTTTGCTATCTTCATGGCCATCACTCATTCACCAAAACACCACCACTGAACCATGCACCTGGTACGGTGTTCATTGTGATGATGGTTTCAATGTAAACAAACTCAACTTTTCATCATCAAGGTTGAAAGGTACGCTCAATCG...

CDS

Download CDS FASTA

2691 bp · LXL04_036830|LXL04_036830|OH1004|CDS

ATGGGATTGCTCTTAGTCCTCCTCCTTATAATATCCCTCTTTTCATCTTCTTCTTCAAAACTAGAAGAAGCTGAAGCTCTACTTAAATGGAAAACCAGCCTCATAAACCAAAACAATCCTTTGCTATCTTCATGGCCATCACTCATTCACCAAAACACCACCACTGAACCATGCACCTGGTACGGTGTTCATTGTGATGATGGTTTCAATGTAAACAAACTCAACTTTTCATCATCAAGGTTGAAAGGTACGCTCAATCG...

Protein

Download Protein FASTA

896 aa · LXL04_036830|LXL04_036830|OH1004|PROTEIN

MGLLLVLLLIISLFSSSSSKLEEAEALLKWKTSLINQNNPLLSSWPSLIHQNTTTEPCTWYGVHCDDGFNVNKLNFSSSRLKGTLNRFMFSSFTNLKHLNLKTNDIYGGIPLEIKYLSKLTFLDLSGNRFSGIIPPEIGILTNFNTLRLNQNQFTGSIPTSLGNLTNLVCFRADDNKLFGYIPQELGKLVNLVNINVSFNFQKGPIPSTLGNLTNLSTLYLHQNNLSNPIPPSLGNLASLMVLSIYMNELSGRIPDELVI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDLXL04_036830
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_036830
LocationChr08:48938966-48945802 (+)
DescriptionSimilar to HCR9-0: Receptor-like protein Cf-9 homolog
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g71400 Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Functional analyses of the CLAVATA2-like proteins and their domains that contribute to CLAVATA2 specificity.2010 · DOI: 10.1104/pp.109.148197
At5g25910 Required for defense against powdery mildew pathogen. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036830 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0007165 signal transduction Biological Process
GO:0010073 meristem maintenance Biological Process
GO:0010200 response to chitin Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G71400
ath:AT5G25910
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.854
Rank 1 · LXL04_036830 · OH-1004
Endoplasmic reticulum0.097
Rank 2 · LXL04_036830 · OH-1004
Cytoplasm0.058
Rank 3 · LXL04_036830 · OH-1004
Nucleus0.037
Rank 4 · LXL04_036830 · OH-1004
Lysosome / Vacuole0.029
Rank 5 · LXL04_036830 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263.18LRRNT_222-66 aa
PF13855.13LRR_870-130 aa
PF23598.2LRR_1490-196 aa
PF23598.2LRR_14206-294 aa
PF13855.13LRR_8214-274 aa
PF12799.14LRR_4262-299 aa
PF13855.13LRR_8263-322 aa
PF12799.14LRR_4311-349 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_036830PF08263.18LRRNT_222662.6e-1041.1
LXL04_036830PF13855.13LRR_8701302.5e-48162.4
LXL04_036830PF23598.2LRR_14901966.5e-41141.0
LXL04_036830PF23598.2LRR_142062946.5e-41141.0
LXL04_036830PF13855.13LRR_82142742.5e-48162.4
LXL04_036830PF12799.14LRR_42622997e-38128.5
LXL04_036830PF13855.13LRR_82633222.5e-48162.4
LXL04_036830PF12799.14LRR_43113497e-38128.5
LXL04_036830PF13855.13LRR_83283702.5e-48162.4
LXL04_036830PF23598.2LRR_143695796.5e-41141.0
LXL04_036830PF13855.13LRR_83774172.5e-48162.4
LXL04_036830PF12799.14LRR_44064407e-38128.5
LXL04_036830PF13855.13LRR_84304902.5e-48162.4
LXL04_036830PF13855.13LRR_84805382.5e-48162.4
LXL04_036830PF13855.13LRR_86226782.5e-48162.4
LXL04_036830PF23598.2LRR_146366996.5e-41141.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C9H7Arabidopsis thalianaReceptor-like protein 1236.288%Swiss-Protmoderate database homology
Q7FZR1Arabidopsis thalianaReceptor-like protein 5235.924%Swiss-Protmoderate database homology

JBrowse

View in Genome Browser