LXL04_036827 | RubberDandelionOmics

Gene overview

LXL04_036827

Reference: OH-1004 Chr: Chr08 Coordinates: 48885669-48887557 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1230 bp · LXL04_036827|LXL04_036827|OH1004|cDNA

ATGGCGACACAACACGCGTTATCCATTCAGAGATCAGATGCAACACAACTTAGCAACCACGGATCAACATCATCCTTCCCTGTTCACCACGAAGAAAAACACCCCAAATCGTTACAATCATCTCACCACTCTCCAACCAACGGAACCGTCGGCCACATTTTTTCATCATCTTCCGGAATCTCTTCAGATCTCCACTTCTCCTCCATTTCTCCTACCGAAACCTCCTCTACGAAATCCACTTTCACCACTCAATCCTCAGG...

CDS

Download CDS FASTA

1230 bp · LXL04_036827|LXL04_036827|OH1004|CDS

ATGGCGACACAACACGCGTTATCCATTCAGAGATCAGATGCAACACAACTTAGCAACCACGGATCAACATCATCCTTCCCTGTTCACCACGAAGAAAAACACCCCAAATCGTTACAATCATCTCACCACTCTCCAACCAACGGAACCGTCGGCCACATTTTTTCATCATCTTCCGGAATCTCTTCAGATCTCCACTTCTCCTCCATTTCTCCTACCGAAACCTCCTCTACGAAATCCACTTTCACCACTCAATCCTCAGG...

Protein

Download Protein FASTA

409 aa · LXL04_036827|LXL04_036827|OH1004|PROTEIN

MATQHALSIQRSDATQLSNHGSTSSFPVHHEEKHPKSLQSSHHSPTNGTVGHIFSSSSGISSDLHFSSISPTETSSTKSTFTTQSSGVLRSTAFRQFMKENNTNSWSTDSLSDFLEFPENTPIDSTTLQPTDNTPCVLPPDDFPKPNDWQDWADQLITDDDATTPNWNDILVDTEPKLELTAVKSSTNSLQVKTMVPASPSEGCTPMTPSSCGSQSKPRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMKVEGLTIY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036827`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036827

Location Chr08:48885669-48887557 (+)

Description Similar to PHR1: Protein PHOSPHATE STARVATION RESPONSE 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g28610`	Transcription factor involved in phosphate starvation signaling.	The Arabidopsis transcription factor PHR1 is essential for adaptation to high light and retaining functional photosynthesis during phosphate starvation.2012 · DOI: 10.1111/j.1399-3054.2011.01520.x
`At5g29000`	Transcription factor acting as central integrator of phosphate starvation responses.	A central regulatory system largely controls transcriptional activation and repression responses to phosphate starvation in Arabidopsis.2010 · DOI: 10.1371/journal.pgen.1001102 Arabidopsis ferritin 1 (AtFer1) gene regulation by the phosphate starvation response 1 (AtPHR1) transcription factor reveals a direct molecular link between iron and phosphate homeostasis.2013 · DOI: 10.1074/jbc.m113.482281
`At3g04450`	Myb family transcription factor PHL13.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0329900`	Transcription factor involved in phosphate starvation signaling.	OsPHR2 is involved in phosphate-starvation signaling and excessive phosphate accumulation in shoots of plants.2008 · DOI: 10.1104/pp.107.111443 Integrative Comparison of the Role of the PHOSPHATE RESPONSE1 Subfamily in Phosphate Signaling and Homeostasis in Rice.2015 · DOI: 10.1104/pp.15.00736
`UniProt: B8ANX9`	Transcription factor involved in phosphate starvation signaling.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036827 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0010468 regulation of gene expression Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0034765 regulation of monoatomic ion transmembrane transport Biological Process

GO:0048364 root development Biological Process

GO:0055063 sulfate ion homeostasis Biological Process

GO:0071486 cellular response to high light intensity Biological Process

GO:1901000 regulation of response to salt stress Biological Process

GO:1903842 response to arsenite ion Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT3G04450

ath:AT4G28610

ath:AT5G29000

dosa:Os03g0329900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.938

Rank 1 · LXL04_036827 · OH-1004

Cytoplasm0.212

Rank 2 · LXL04_036827 · OH-1004

Mitochondrion0.027

Rank 3 · LXL04_036827 · OH-1004

Cell membrane0.016

Rank 4 · LXL04_036827 · OH-1004

Golgi apparatus0.007

Rank 5 · LXL04_036827 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00249.38Myb_DNA-binding219-270 aa

PF14379.12Myb_CC_LHEQLE304-349 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036827	`PF00249.38`	Myb_DNA-binding	219	270	2.7e-10	40.9
LXL04_036827	`PF14379.12`	Myb_CC_LHEQLE	304	349	1.9e-24	85.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94CL7`	Arabidopsis thaliana	Protein PHOSPHATE STARVATION RESPONSE 1	53.871%	Swiss-Prot	strong database homology
`Q8GUN5`	Arabidopsis thaliana	Protein PHR1-LIKE 1	53.282%	Swiss-Prot	moderate database homology
`F4J3P7`	Arabidopsis thaliana	Myb family transcription factor PHL13	44.548%	Swiss-Prot	moderate database homology
`Q10LZ1`	Oryza sativa subsp. japonica	Protein PHOSPHATE STARVATION RESPONSE 1	47.706%	Swiss-Prot	moderate database homology
`B8ANX9`	Oryza sativa subsp. indica	Protein PHOSPHATE STARVATION RESPONSE 1	60.465%	Swiss-Prot	moderate database homology

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