LXL04_036816 | RubberDandelionOmics

Gene overview

LXL04_036816

Reference: OH-1004 Chr: Chr08 Coordinates: 48779411-48783913 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1878 bp · LXL04_036816|LXL04_036816|OH1004|cDNA

ATGGATATCATGAAGACAAGTTCACACCTCGATGATCTATCTTCCTCACCTTCACCAATCCATCACAATAGCAGAAATGTCTTCCAAATGCTAGCAAGAAGAGAGATATCTCCAAGAATAAAAAAATATCTACCAAAAAAGCAAGAAAGTCAAACATCTGAACATCACCATCAGTCATTCATTAAGCCCAAAAGTGAAAGTGCAAGGGACTCAAGACGCGAGCTTCTTTCATGGGTGGAAGCCGAGTCCTTACAGTGTTT...

CDS

Download CDS FASTA

1878 bp · LXL04_036816|LXL04_036816|OH1004|CDS

ATGGATATCATGAAGACAAGTTCACACCTCGATGATCTATCTTCCTCACCTTCACCAATCCATCACAATAGCAGAAATGTCTTCCAAATGCTAGCAAGAAGAGAGATATCTCCAAGAATAAAAAAATATCTACCAAAAAAGCAAGAAAGTCAAACATCTGAACATCACCATCAGTCATTCATTAAGCCCAAAAGTGAAAGTGCAAGGGACTCAAGACGCGAGCTTCTTTCATGGGTGGAAGCCGAGTCCTTACAGTGTTT...

Protein

Download Protein FASTA

625 aa · LXL04_036816|LXL04_036816|OH1004|PROTEIN

MDIMKTSSHLDDLSSSPSPIHHNSRNVFQMLARREISPRIKKYLPKKQESQTSEHHHQSFIKPKSESARDSRRELLSWVEAESLQCLSAKYCPLMPSPRSTIAAAFSSDGKYLASTHGDHTVKIIDCQTGKCLKVLSGHRRTPWVVRFHPLRPEILASGSLDHEVRLWNANTSECIGSRDFYRPIASIAFHSEGELLAVAAGHKLYLWQYNNKGETSSPSIVLRTRRSLRAVHFHPHSAQLLLTAEVNDLDSSDISMTPA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036816`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_036816`
Location	Chr08:48779411-48783913 (+)
Description	Similar to Ambra1: Activating molecule in BECN1-regulated autophagy protein 1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_036816` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0000045 autophagosome assembly Biological Process GO:0000082 G1/S transition of mitotic cell cycle Biological Process GO:0000209 protein polyubiquitination Biological Process GO:0000423 mitophagy Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0006357 regulation of transcription by RNA polymerase II Biological Process GO:0006914 autophagy Biological Process GO:0007281 germ cell development Biological Process GO:0008285 negative regulation of cell population proliferation Biological Process GO:0009267 cellular response to starvation Biological Process GO:0010508 positive regulation of autophagy Biological Process GO:0030154 cell differentiation Biological Process
KEGG gene cross-reference	ana:alr3466 dre:100332642 dre:559106 hsa:55626 mmu:228361 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.560

Rank 1 · LXL04_036816 · OH-1004

Nucleus0.322

Rank 2 · LXL04_036816 · OH-1004

Lysosome / Vacuole0.131

Rank 3 · LXL04_036816 · OH-1004

Cell membrane0.109

Rank 4 · LXL04_036816 · OH-1004

Golgi apparatus0.100

Rank 5 · LXL04_036816 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24805.2EIF3I99-201 aa

PF25174.2Beta-prop_THOC3103-241 aa

PF23381.2Beta-prop_IFT122_1st103-215 aa

PF25173.2Beta-prop_WDR3_1st103-209 aa

PF24796.2WDR55103-176 aa

PF25175.2Beta-prop_WDR5104-244 aa

PF24817.2WD40_WDHD1_1st104-176 aa

PF25172.2Beta-prop_WDR3_2nd104-205 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036816	`PF24805.2`	EIF3I	99	201	8.8e-09	35.6
LXL04_036816	`PF25174.2`	Beta-prop_THOC3	103	241	1.1e-21	77.7
LXL04_036816	`PF23381.2`	Beta-prop_IFT122_1st	103	215	8.3e-20	72.0
LXL04_036816	`PF25173.2`	Beta-prop_WDR3_1st	103	209	6e-13	49.6
LXL04_036816	`PF24796.2`	WDR55	103	176	4.7e-10	39.7
LXL04_036816	`PF25175.2`	Beta-prop_WDR5	104	244	4.9e-22	79.3
LXL04_036816	`PF24817.2`	WD40_WDHD1_1st	104	176	8.1e-15	55.5
LXL04_036816	`PF25172.2`	Beta-prop_WDR3_2nd	104	205	1.2e-07	32.0
LXL04_036816	`PF24807.2`	WD40_CDC20-Fz	105	212	6.9e-15	55.8
LXL04_036816	`PF25168.2`	Beta-prop_WDR36-Utp21_2nd	105	213	4.1e-08	33.6
LXL04_036816	`PF24814.2`	WD40_Prp19	108	236	4.5e-12	46.3
LXL04_036816	`PF23393.3`	Beta-prop_WDR90_POC16_2nd	111	213	3.8e-07	30.4
LXL04_036816	`PF00400.39`	WD40	130	169	2.4e-16	60.1
LXL04_036816	`PF23414.2`	Beta-prop_EML_2	144	243	6e-12	46.2
LXL04_036816	`PF23409.2`	Beta-prop_EML	162	245	5.6e-10	39.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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