Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1611 bp · LXL04_036815|LXL04_036815|OH1004|cDNA
ATGAAAATCGTGGAGCATAAAAGAACTTGTTCATTCATGGAGAATTTATCGACAATGATAGGCTCAAAAGGATTAATAAAAAGGGATGAATTCGTAAGAATCCTTATCCAGTGTCTATATTCATTAGGTTACGAGAAATCTGCAGCTTGTTTGGAATTAGAATCCAGTATTTCATACCAATCTCCAGAATTTAAGCTGCTTGAATCCTTAATAACTGGTGCTAATTGGGAGCTTTGCATTGATACCTTATATGGTATAAA...
1611 bp · LXL04_036815|LXL04_036815|OH1004|CDS
ATGAAAATCGTGGAGCATAAAAGAACTTGTTCATTCATGGAGAATTTATCGACAATGATAGGCTCAAAAGGATTAATAAAAAGGGATGAATTCGTAAGAATCCTTATCCAGTGTCTATATTCATTAGGTTACGAGAAATCTGCAGCTTGTTTGGAATTAGAATCCAGTATTTCATACCAATCTCCAGAATTTAAGCTGCTTGAATCCTTAATAACTGGTGCTAATTGGGAGCTTTGCATTGATACCTTATATGGTATAAA...
Protein
Download Protein FASTA536 aa · LXL04_036815|LXL04_036815|OH1004|PROTEIN
MKIVEHKRTCSFMENLSTMIGSKGLIKRDEFVRILIQCLYSLGYEKSAACLELESSISYQSPEFKLLESLITGANWELCIDTLYGIKNMTDEQRDTALFLVSKQCLLECLGRGDDSLALSLLRKQISKLQVGREKIHKLAFSLFSLGELGLDKVHNDCNVFQELRKNVVNELENILPPPITIPDRRLEHLVERVVGSQIDSCIYHNTHDPVSIYKDHSCGRDQIPTETIQILSEHKNEVWFVQFSNNGDYLASSSSDCTA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_036815 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_036815 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr08:48774900-48777911 (+) | |||||||||
| Description | Similar to WDS: WD repeat-containing protein WDS homolog | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006970 response to osmotic stress Biological Process GO:0009416 response to light stimulus Biological Process GO:0009646 response to absence of light Biological Process GO:0009723 response to ethylene Biological Process GO:0009733 response to auxin Biological Process GO:0009737 response to abscisic acid Biological Process GO:0010150 leaf senescence Biological Process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process GO:0000151 ubiquitin ligase complex Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005737 cytoplasm Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT5G08560 ath:AT5G43920 mmu:226757 xtr:733878 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF23627.3LisH_WDR2618-61 aaPF24105.2Beta-prop_CAF1B_HIR1211-344 aaPF24796.2WDR55225-312 aaPF24807.2WD40_CDC20-Fz226-393 aaPF24814.2WD40_Prp19226-287 aaPF25460.2Beta-prop_Aladin226-342 aaPF25173.2Beta-prop_WDR3_1st227-346 aaPF23381.2Beta-prop_IFT122_1st227-439 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_036815 | PF23627.3 | LisH_WDR26 | 18 | 61 | 2.4e-22 | 78.7 |
| LXL04_036815 | PF24105.2 | Beta-prop_CAF1B_HIR1 | 211 | 344 | 2.9e-24 | 86.5 |
| LXL04_036815 | PF24796.2 | WDR55 | 225 | 312 | 9.1e-19 | 68.3 |
| LXL04_036815 | PF24807.2 | WD40_CDC20-Fz | 226 | 393 | 2.9e-38 | 132.6 |
| LXL04_036815 | PF24814.2 | WD40_Prp19 | 226 | 287 | 2.4e-33 | 116.1 |
| LXL04_036815 | PF25460.2 | Beta-prop_Aladin | 226 | 342 | 4.3e-17 | 63.0 |
| LXL04_036815 | PF25173.2 | Beta-prop_WDR3_1st | 227 | 346 | 1.4e-50 | 172.3 |
| LXL04_036815 | PF23381.2 | Beta-prop_IFT122_1st | 227 | 439 | 2.1e-44 | 152.6 |
| LXL04_036815 | PF23414.2 | Beta-prop_EML_2 | 227 | 296 | 6.5e-25 | 88.7 |
| LXL04_036815 | PF23409.2 | Beta-prop_EML | 227 | 402 | 1.9e-15 | 57.8 |
| LXL04_036815 | PF25168.2 | Beta-prop_WDR36-Utp21_2nd | 227 | 306 | 2.8e-13 | 50.6 |
| LXL04_036815 | PF00400.39 | WD40 | 228 | 263 | 4.1e-40 | 135.2 |
| LXL04_036815 | PF24817.2 | WD40_WDHD1_1st | 228 | 273 | 3.5e-27 | 96.1 |
| LXL04_036815 | PF25047.1 | Beta-prop_TEP1_2nd | 228 | 320 | 9.4e-22 | 78.1 |
| LXL04_036815 | PF24782.3 | WD40_MABP1-WDR62_2nd | 228 | 434 | 8.8e-14 | 51.9 |
| LXL04_036815 | PF24797.2 | Beta-prop_WDR35_TULP_N | 228 | 361 | 1e-12 | 48.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.