LXL04_036814 | RubberDandelionOmics

Gene overview

LXL04_036814

Reference: OH-1004 Chr: Chr08 Coordinates: 48755607-48760616 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2307 bp · LXL04_036814|LXL04_036814|OH1004|cDNA

ATGCCAACTACTGTGATGCTGTTGTTTATTTTCCCTCTTCTCACTCTCGGTTATCCTACAGTTTGTTACGGCATTCCATTTCTGAACATCAATTTGTCTCCTTCTCTACTTCCAAGCCAACCTATACTTGTGAGAAAAGATGGTTTTGAACATCTCAAAGTGAGGTTCATGTCAATGAGCACAAGATTTCCATCTATATCATCACACACACATCCTTCATATGTACCTgcttcttctccttctccttctccttctccttc...

CDS

Download CDS FASTA

2307 bp · LXL04_036814|LXL04_036814|OH1004|CDS

ATGCCAACTACTGTGATGCTGTTGTTTATTTTCCCTCTTCTCACTCTCGGTTATCCTACAGTTTGTTACGGCATTCCATTTCTGAACATCAATTTGTCTCCTTCTCTACTTCCAAGCCAACCTATACTTGTGAGAAAAGATGGTTTTGAACATCTCAAAGTGAGGTTCATGTCAATGAGCACAAGATTTCCATCTATATCATCACACACACATCCTTCATATGTACCTGCTTCTTCTCCTTCTCCTTCTCCTTCTCCTTC...

Protein

Download Protein FASTA

768 aa · LXL04_036814|LXL04_036814|OH1004|PROTEIN

MPTTVMLLFIFPLLTLGYPTVCYGIPFLNINLSPSLLPSQPILVRKDGFEHLKVRFMSMSTRFPSISSHTHPSYVPASSPSPSPSPSPTIQGPVASPRRKRHRHHFRHGKITHSISPSPSPVPGCDQTCSEPLTSTPLGSPCGCVFPMKVKLLLQVSVYAVFPVVNELEIEIATGTYLTQSQVVITGASADSQNQEKTAVDINLVPLGEKFDNTTALLTYDKIWRKKLSLNRTLFGDYEVVYIIYPGLPSSPPYGGQPGS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036814`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036814

Location Chr08:48755607-48760616 (-)

Description Similar to ALE2: Receptor-like serine/threonine-protein kinase ALE2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g20300`	Required during the differentiation of the protoderm into shoots epidermis and cuticle.	Novel receptor-like kinase ALE2 controls shoot development by specifying epidermis in Arabidopsis.2007 · DOI: 10.1242/dev.003533
`At1g68690`	Could be involved in the negative regulation of root growth.	No verified direct reference in this release
`At5g18610`	May act as a receptor-like cytoplasmic kinase in chitin-induced immune signaling.	Selective regulation of the chitin-induced defense response by the Arabidopsis receptor-like cytoplasmic kinase PBL27.2014 · DOI: 10.1111/tpj.12535 The Arabidopsis CERK1-associated kinase PBL27 connects chitin perception to MAPK activation.2016 · DOI: 10.15252/embj.201694248
`At3g20530`	May be involved in plant defense signaling.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0372100`	Functions as an immediate downstream signaling partner of CERK1 in the microbial peptidoglycans (PGNs) and fungal chitin signaling pathways that mediate innate immunity.	A receptor-like cytoplasmic kinase targeted by a plant pathogen effector is directly phosphorylated by the chitin receptor and mediates rice immunity.2013 · DOI: 10.1016/j.chom.2013.02.007

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036814 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002758 innate immune response-activating signaling pathway Biological Process

GO:0006952 defense response Biological Process

GO:0007165 signal transduction Biological Process

GO:0010068 protoderm histogenesis Biological Process

GO:0030154 cell differentiation Biological Process

GO:0043410 positive regulation of MAPK cascade Biological Process

GO:0045087 innate immune response Biological Process

GO:0045088 regulation of innate immune response Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0071323 cellular response to chitin Biological Process

GO:0071456 cellular response to hypoxia Biological Process

KEGG gene cross-reference

ath:AT1G68690

ath:AT2G20300

ath:AT3G20530

ath:AT5G18610

dosa:Os05g0372100

osa:4338592

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.820

Rank 1 · LXL04_036814 · OH-1004

Cytoplasm0.094

Rank 2 · LXL04_036814 · OH-1004

Endoplasmic reticulum0.088

Rank 3 · LXL04_036814 · OH-1004

Nucleus0.083

Rank 4 · LXL04_036814 · OH-1004

Lysosome / Vacuole0.030

Rank 5 · LXL04_036814 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23180.2ALE2_N131-249 aa

PF00069.32Pkinase379-649 aa

PF07714.24PK_Tyr_Ser-Thr381-650 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036814	`PF23180.2`	ALE2_N	131	249	8.5e-55	184.7
LXL04_036814	`PF00069.32`	Pkinase	379	649	4.8e-45	154.7
LXL04_036814	`PF07714.24`	PK_Tyr_Ser-Thr	381	650	9.9e-48	163.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8RWW0`	Arabidopsis thaliana	Receptor-like serine/threonine-protein kinase ALE2	65.295%	Swiss-Prot	strong database homology
`Q9SX31`	Arabidopsis thaliana	Proline-rich receptor-like protein kinase PERK9	49.326%	Swiss-Prot	weak database homology
`Q1PDV6`	Arabidopsis thaliana	Serine/threonine-protein kinase PBL27	52.667%	Swiss-Prot	weak database homology
`F4JEQ2`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL23	51.623%	Swiss-Prot	weak database homology
`Q6I5Q6`	Oryza sativa subsp. japonica	Receptor-like cytoplasmic kinase 185	53.220%	Swiss-Prot	weak database homology

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