LXL04_036813 | RubberDandelionOmics

Gene overview

LXL04_036813

Reference: OH-1004 Chr: Chr08 Coordinates: 48748591-48753546 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1209 bp · LXL04_036813|LXL04_036813|OH1004|cDNA

ATGGCAGCTATCTTCTTTACCAGCGCCATGCTCCCGCGCTTTATCTCCACTTCATCGCGTATCTCCTTCACTCCCGTAACCACTCCATACAGAGTGCATAGATTCAGAACGAAAATGTTGGCGTCGGCGACCCAGGCTGAAACTCCAACTGTGCTTGGATTCGGTGGTGTGGGGGTTGATCTATTGGCTACTGTGGCTACCTTCCCTAACCCAGATGATAAGATCCGAAGCACCAGCTTAAAGGTACAAGGAGGTGGTAA...

CDS

Download CDS FASTA

1209 bp · LXL04_036813|LXL04_036813|OH1004|CDS

ATGGCAGCTATCTTCTTTACCAGCGCCATGCTCCCGCGCTTTATCTCCACTTCATCGCGTATCTCCTTCACTCCCGTAACCACTCCATACAGAGTGCATAGATTCAGAACGAAAATGTTGGCGTCGGCGACCCAGGCTGAAACTCCAACTGTGCTTGGATTCGGTGGTGTGGGGGTTGATCTATTGGCTACTGTGGCTACCTTCCCTAACCCAGATGATAAGATCCGAAGCACCAGCTTAAAGGTACAAGGAGGTGGTAA...

Protein

Download Protein FASTA

402 aa · LXL04_036813|LXL04_036813|OH1004|PROTEIN

MAAIFFTSAMLPRFISTSSRISFTPVTTPYRVHRFRTKMLASATQAETPTVLGFGGVGVDLLATVATFPNPDDKIRSTSLKVQGGGNAGNALTCVSRLGLNARLISKVANDAQGRGILEELKDDGVDVSFFSVSEEGNSPFTYVIVDDQTKTRTCIHTPGSPPMIPDDLSNTSLLSALDGVNLVYFDVRLPETALVVAHEAIRRKIPILIDAERPREGLDDLLNLSDYVVCSAKLPQTWTGAPSVSTALVSMLLKLPKLK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036813`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036813

Location Chr08:48748591-48753546 (-)

Description Similar to Khk: Ketohexokinase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g17160`	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium.	Identification of the Plant Ribokinase and Discovery of a Role for Arabidopsis Ribokinase in Nucleoside Metabolism.2016 · DOI: 10.1074/jbc.m116.754689

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036813 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005979 regulation of glycogen biosynthetic process Biological Process

GO:0006000 fructose metabolic process Biological Process

GO:0006001 fructose catabolic process Biological Process

GO:0006098 pentose-phosphate shunt Biological Process

GO:0009116 nucleoside metabolic process Biological Process

GO:0009744 response to sucrose Biological Process

GO:0009749 response to glucose Biological Process

GO:0009750 response to fructose Biological Process

GO:0010043 response to zinc ion Biological Process

GO:0016052 carbohydrate catabolic process Biological Process

GO:0019303 D-ribose catabolic process Biological Process

GO:0032868 response to insulin Biological Process

KEGG gene cross-reference

ath:AT1G17160

hsa:64080

mmu:16548

mmu:71336

rno:25659

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.960

Rank 1 · LXL04_036813 · OH-1004

Mitochondrion0.062

Rank 2 · LXL04_036813 · OH-1004

Cytoplasm0.043

Rank 3 · LXL04_036813 · OH-1004

Peroxisome0.028

Rank 4 · LXL04_036813 · OH-1004

Nucleus0.022

Rank 5 · LXL04_036813 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00294.30PfkB59-275 aa

PF00294.30PfkB335-388 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036813	`PF00294.30`	PfkB	59	275	7.8e-39	134.5
LXL04_036813	`PF00294.30`	PfkB	335	388	7.8e-39	134.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`A1A6H3`	Arabidopsis thaliana	Ribokinase	22.472%	Swiss-Prot	weak database homology

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