LXL04_036807 | RubberDandelionOmics

Gene overview

LXL04_036807

Reference: OH-1004 Chr: Chr08 Coordinates: 48636217-48637715 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

984 bp · LXL04_036807|LXL04_036807|OH1004|cDNA

ATGTCTACGGTGGCGCAACTCGCTATCGTTACTTCCACTTGTACTAATCATCATCAAACTTCCAAATGCTTCGGTTTTTCCTTTCACATCGACAGCAGCAAATTGACCTCCGTCTTCACGGCTACGACAAGCCATACTCGTCCTATCAGGAACAGAACGAAAGCTCCATTATTGGTCACGTGCTCTACAGCTAAGCCGTCTTCCTCCACCGAAATCAGTTCCGCAACCAGAATCAGGAGTGAAGTTCTTACCCCATTCAG...

CDS

Download CDS FASTA

984 bp · LXL04_036807|LXL04_036807|OH1004|CDS

ATGTCTACGGTGGCGCAACTCGCTATCGTTACTTCCACTTGTACTAATCATCATCAAACTTCCAAATGCTTCGGTTTTTCCTTTCACATCGACAGCAGCAAATTGACCTCCGTCTTCACGGCTACGACAAGCCATACTCGTCCTATCAGGAACAGAACGAAAGCTCCATTATTGGTCACGTGCTCTACAGCTAAGCCGTCTTCCTCCACCGAAATCAGTTCCGCAACCAGAATCAGGAGTGAAGTTCTTACCCCATTCAG...

Protein

Download Protein FASTA

327 aa · LXL04_036807|LXL04_036807|OH1004|PROTEIN

MSTVAQLAIVTSTCTNHHQTSKCFGFSFHIDSSKLTSVFTATTSHTRPIRNRTKAPLLVTCSTAKPSSSTEISSATRIRSEVLTPFRSVRMFFYIAFIAQASLGGLIATTQLIGALSNPARADSVIEIAKGLGIDIGAASLFAFLYYRENKIKNAQMARLSREENLSNLKLRVDERKIITVSELRGLARLVILSGPSSFITEAFKSSETFTEQLVERGVLVVPLSTDGNIPSFEFDESEEMKEVTKKRRRLWQLVPVLTP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036807`
TK1151 ID	TkA04G023830
OH-1004 ID	LXL04_036807
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_036807

Location Chr08:48636217-48637715 (-)

Description Similar to LPA1: Protein LOW PSII ACCUMULATION 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g02910`	Chaperone required for efficient photosystem II (PSII) assembly.	LOW PSII ACCUMULATION1 is involved in efficient assembly of photosystem II in Arabidopsis thaliana.2006 · DOI: 10.1105/tpc.105.037689

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036807 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010270 photosystem II oxygen evolving complex assembly Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

KEGG gene cross-reference

ath:AT1G02910

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.977

Rank 1 · LXL04_036807 · OH-1004

Mitochondrion0.026

Rank 2 · LXL04_036807 · OH-1004

Nucleus0.023

Rank 3 · LXL04_036807 · OH-1004

Cytoplasm0.014

Rank 4 · LXL04_036807 · OH-1004

Cell membrane0.009

Rank 5 · LXL04_036807 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11998.14DUF349374-150 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036807	`PF11998.14`	DUF3493	74	150	1.4e-22	80.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SRY4`	Arabidopsis thaliana	Protein LOW PSII ACCUMULATION 1, chloroplastic	31.298%	Swiss-Prot	moderate database homology

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