LXL04_036689 | RubberDandelionOmics

Gene overview

LXL04_036689

Reference: OH-1004 Chr: Chr08 Coordinates: 46712144-46713455 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

546 bp · LXL04_036689|LXL04_036689|OH1004|cDNA

ATGGCTCCTGAGTTGTTTGATAATGATGGAGTTCATTCATATGCTTCTGATTTATGGGCTCTTGGTTGTGTCCTGTATGAATGCTATGCTGGTAGACCACCATTTATAGGAGAGAAATTGAAAGAATTAGTAAAATCTATCCTCATTGATCCAATTCCATCCCTTTCGGGGAATCCAAGCCCTCCATTTGCTAATCTCGTTGTATTGGTGGCTTTAAAAGTTCCGCCGACCATGAGTCAAAATCGAAGTGGTCGGACAGG...

CDS

Download CDS FASTA

546 bp · LXL04_036689|LXL04_036689|OH1004|CDS

ATGGCTCCTGAGTTGTTTGATAATGATGGAGTTCATTCATATGCTTCTGATTTATGGGCTCTTGGTTGTGTCCTGTATGAATGCTATGCTGGTAGACCACCATTTATAGGAGAGAAATTGAAAGAATTAGTAAAATCTATCCTCATTGATCCAATTCCATCCCTTTCGGGGAATCCAAGCCCTCCATTTGCTAATCTCGTTGTATTGGTGGCTTTAAAAGTTCCGCCGACCATGAGTCAAAATCGAAGTGGTCGGACAGG...

Protein

Download Protein FASTA

181 aa · LXL04_036689|LXL04_036689|OH1004|PROTEIN

MAPELFDNDGVHSYASDLWALGCVLYECYAGRPPFIGEKLKELVKSILIDPIPSLSGNPSPPFANLVVLVALKVPPTMSQNRSGRTGTFRGGHTFGARNGGRNYRCGGGRGGGSGDGGRWSRQQRALAGWDFGWFPPATVEQPRRWLASFTVHTNHQQFFFGPTFHSSPTGSLLFWPISAV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036689`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036689

Location Chr08:46712144-46713455 (+)

Description Similar to RUK: Serine/threonine-protein kinase RUNKEL

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g18700`	Essential protein that regulates phragmoplast microtubule organization during cell plate expansion in cytokinesis during cell division, both somatic and syncytial.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_036689 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000226 microtubule cytoskeleton organization Biological Process

GO:0000911 cytokinesis by cell plate formation Biological Process

GO:0000914 phragmoplast assembly Biological Process

GO:0003351 epithelial cilium movement involved in extracellular fluid movement Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0007224 smoothened signaling pathway Biological Process

GO:0007349 cellularization Biological Process

GO:0009555 pollen development Biological Process

GO:0009556 microsporogenesis Biological Process

GO:0009966 regulation of signal transduction Biological Process

GO:0010245 radial microtubular system formation Biological Process

GO:0010342 endosperm cellularization Biological Process

KEGG gene cross-reference

ath:AT5G18700

hsa:54986

mmu:209012

mtu:Rv1266c

pon:100173957

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.491

Rank 1 · LXL04_036689 · OH-1004

Cytoplasm0.432

Rank 2 · LXL04_036689 · OH-1004

Mitochondrion0.082

Rank 3 · LXL04_036689 · OH-1004

Endoplasmic reticulum0.078

Rank 4 · LXL04_036689 · OH-1004

Cell membrane0.077

Rank 5 · LXL04_036689 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase1-49 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036689	`PF00069.32`	Pkinase	1	49	2.1e-07	31.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4JY37`	Arabidopsis thaliana	Serine/threonine-protein kinase RUNKEL	57.500%	Swiss-Prot	weak database homology

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