Gene Card
Gene overview
cDNA / CDS / Protein Sequences
528 bp · LXL04_036603|LXL04_036603|OH1004|cDNA
ATGGCACTTTCTCTCTCACAGTTCACTTCATCCCCATTTCTTCCTGCGTCATCGGCAAGAACATCCACCAATTATCGAATCATTTCAACAACAATTAAATCCACCCTAAATCCAATCACCAATTTCATCAACACCACCATTCTCACCGCCGCAAACGGGAAGAAGAACCACCGCTTCGCCGTCATCGTCAAAGCCGCAGAGGaacgacaacaacaacaacccaCCGCCGCAGAATCAGAATCCTCCCAAAAGCCCCCCTC...
528 bp · LXL04_036603|LXL04_036603|OH1004|CDS
ATGGCACTTTCTCTCTCACAGTTCACTTCATCCCCATTTCTTCCTGCGTCATCGGCAAGAACATCCACCAATTATCGAATCATTTCAACAACAATTAAATCCACCCTAAATCCAATCACCAATTTCATCAACACCACCATTCTCACCGCCGCAAACGGGAAGAAGAACCACCGCTTCGCCGTCATCGTCAAAGCCGCAGAGGAACGACAACAACAACAACCCACCGCCGCAGAATCAGAATCCTCCCAAAAGCCCCCCTC...
Protein
Download Protein FASTA175 aa · LXL04_036603|LXL04_036603|OH1004|PROTEIN
MALSLSQFTSSPFLPASSARTSTNYRIISTTIKSTLNPITNFINTTILTAANGKKNHRFAVIVKAAEERQQQQPTAAESESSQKPPSDEELSELGTEIKKAMMDREIKKDENVWSGVVEEIGRIEWPAFSKVLGTTGVVLGVIAGSSVVLLTVNAVLAELSDRVFVGRGVQDFFG
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_036603 |
|---|---|
| TK1151 ID | TkA04G034510 |
| OH-1004 ID | LXL04_036603 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 61.386 / OH-1004 35.429Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_036603 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr08:45221480-45222007 (-) | ||||||
| Description | Similar to SECE1: Preprotein translocase subunit SECE1 | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0006605 protein targeting Biological Process GO:0006886 intracellular protein transport Biological Process GO:0009306 protein secretion Biological Process GO:0009507 chloroplast Cellular Component GO:0009535 chloroplast thylakoid membrane Cellular Component GO:0008320 protein transmembrane transporter activity Molecular Function | ||||||
| KEGG gene cross-reference | ath:AT4G14870 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
O23342 | Arabidopsis thaliana | Preprotein translocase subunit SECE1 | 51.678% | Swiss-Prot | strong database homology |