Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2727 bp · LXL04_036598|LXL04_036598|OH1004|cDNA
ATGGCATCATCGAGCAAGAAAAAGCATGAGGAGGAAGATGTTggcgaggaagaagaagagTTTGAACATTTTGATGACTTTACCCTAGCATCTTCATGGGAAAGGTTTATATCTGAAATTGAGGCTGTTTGTCGACGATGGTTATCAACTGGTCCCAAAAACTTGTTGGAAAAAGGAGCTGTTCAATTAGGAGAGCAAAAGAATTTGTATAAAATCAAATCCGAGCTTAAATATGCCATGAAAAACTATTGCATGGAGTA...
2727 bp · LXL04_036598|LXL04_036598|OH1004|CDS
ATGGCATCATCGAGCAAGAAAAAGCATGAGGAGGAAGATGTTGGCGAGGAAGAAGAAGAGTTTGAACATTTTGATGACTTTACCCTAGCATCTTCATGGGAAAGGTTTATATCTGAAATTGAGGCTGTTTGTCGACGATGGTTATCAACTGGTCCCAAAAACTTGTTGGAAAAAGGAGCTGTTCAATTAGGAGAGCAAAAGAATTTGTATAAAATCAAATCCGAGCTTAAATATGCCATGAAAAACTATTGCATGGAGTA...
Protein
Download Protein FASTA908 aa · LXL04_036598|LXL04_036598|OH1004|PROTEIN
MASSSKKKHEEEDVGEEEEEFEHFDDFTLASSWERFISEIEAVCRRWLSTGPKNLLEKGAVQLGEQKNLYKIKSELKYAMKNYCMEYYFEISNSGKAADWNWNATLHELQLSFGVKEFMVIAPQSASGVILDSPEASKLLSAVAIAFSNCSSLWPAFVPVHDPSRKAYIGIQNMGTVFTRRFEGDLISSQVPVKLMHLEGLYELFVSKFAFSSSDLSTHLFKVHFTMKLTYKTLPYDEDNEAAVLNSESDIITDNGGDNN...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_036598 |
|---|---|
| TK1151 ID | TkA04G034790 |
| OH-1004 ID | LXL04_036598 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.100 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_036598 |
|---|---|
| Location | Chr08:45113225-45118704 (+) |
| Description | Similar to rab3gap1: Rab3 GTPase-activating protein catalytic subunit |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0010628 positive regulation of gene expression Biological Process GO:0032482 Rab protein signal transduction Biological Process GO:0034389 lipid droplet organization Biological Process GO:0048489 synaptic vesicle transport Biological Process GO:0050821 protein stabilization Biological Process GO:0097051 establishment of protein localization to endoplasmic reticulum membrane Biological Process GO:1903061 positive regulation of protein lipidation Biological Process GO:1903373 positive regulation of endoplasmic reticulum tubular network organization Biological Process GO:2000786 positive regulation of autophagosome assembly Biological Process GO:0005737 cytoplasm Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component |
| KEGG gene cross-reference | hsa:22930 mmu:226407 xla:447515 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF13890.12Rab3-GTPase_cat539-693 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_036598 | PF13890.12 | Rab3-GTPase_cat | 539 | 693 | 6.5e-57 | 192.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.