LXL04_036566 | RubberDandelionOmics

Gene overview

LXL04_036566

Reference: OH-1004 Chr: Chr08 Coordinates: 44597376-44599286 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1020 bp · LXL04_036566|LXL04_036566|OH1004|cDNA

ATGTTACTACCTCCTTGGGTCCTTCCTTCTCGTTCGTTGCCCATCATCGACGAGCAACCAGACGTGCCTCAACCCTCGACTGCTCGGCCGGAGTCACTTACCACCCACCGAACACTCGCAACTCAGCCCTCGACTGATCTACAGTTCTGCACAGCACGGCAGGGACGAATTTACAGCTCTAGTTTCGTAACGAAAATACACCAACTGACATATATTGTTTTGTTAGTGGGAGAGATGAAACGTGTTCATGGTGTTGTACG...

CDS

Download CDS FASTA

1020 bp · LXL04_036566|LXL04_036566|OH1004|CDS

ATGTTACTACCTCCTTGGGTCCTTCCTTCTCGTTCGTTGCCCATCATCGACGAGCAACCAGACGTGCCTCAACCCTCGACTGCTCGGCCGGAGTCACTTACCACCCACCGAACACTCGCAACTCAGCCCTCGACTGATCTACAGTTCTGCACAGCACGGCAGGGACGAATTTACAGCTCTAGTTTCGTAACGAAAATACACCAACTGACATATATTGTTTTGTTAGTGGGAGAGATGAAACGTGTTCATGGTGTTGTACG...

Protein

Download Protein FASTA

339 aa · LXL04_036566|LXL04_036566|OH1004|PROTEIN

MLLPPWVLPSRSLPIIDEQPDVPQPSTARPESLTTHRTLATQPSTDLQFCTARQGRIYSSSFVTKIHQLTYIVLLVGEMKRVHGVVRSLAPRFSVTRTLATSSASAIDPYPNSNTSETLEDFEKSIYGDVPESNNSTFARSSFFHKLDQQKKALERSRTNGPSFRRSGGFMDGLDGSFTSLTDGLDGKLKEAATYFEYDLNEVEKDDYKFRSDVTFWPGNTYDVKDLDVTKPGIRKPSKRLEFEVTTEEVLKKADFRDVK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036566`
TK1151 ID	TkA04G036910
OH-1004 ID	LXL04_036566
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	98.900
Protein coverage (%)	TK1151 100.000 / OH-1004 76.991 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_036566`
Location	Chr08:44597376-44599286 (-)
Description	Similar to rpsR: 30S ribosomal protein S18 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_036566` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006412 translation Biological Process GO:0005840 ribosome Cellular Component GO:0022627 cytosolic small ribosomal subunit Cellular Component GO:1990904 ribonucleoprotein complex Cellular Component GO:0003735 structural constituent of ribosome Molecular Function GO:0070181 small ribosomal subunit rRNA binding Molecular Function
KEGG gene cross-reference	bab:bbp_509 bcc:BCc_369 ldb:Ldb0009 tth:TT_C1742 ttj:TTHA0243 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.923

Rank 1 · LXL04_036566 · OH-1004

Nucleus0.053

Rank 2 · LXL04_036566 · OH-1004

Cytoplasm0.049

Rank 3 · LXL04_036566 · OH-1004

Plastid0.023

Rank 4 · LXL04_036566 · OH-1004

Cell membrane0.013

Rank 5 · LXL04_036566 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01084.27Ribosomal_S18253-301 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036566	`PF01084.27`	Ribosomal_S18	253	301	7.1e-16	58.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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