LXL04_036519 | RubberDandelionOmics

Gene overview

LXL04_036519

Reference: OH-1004 Chr: Chr08 Coordinates: 43825498-43830498 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3009 bp · LXL04_036519|LXL04_036519|OH1004|cDNA

ATGTCCGGTCGCCATGAAAAGGGCGTCAATGTTCAGGTCCTTCTTCGGTGCAGGCCTTTTAGTGACGATGAGTTAAGGAACAACGCCCCTCAGGTTGTAACGTGTAATGAGTACCAGAGAGAAGTTGCGGTTTCACAGAGTATTGCTGGGAAGCAAATCGATAGGGTTTTCACGTTTGACAAGGTTTTTGGACCTACCGCCCACCAAAAAGATCTATATGAACAAGCAATCACTCCTATCGTGAATGAAGTTCTAGAAGG...

CDS

Download CDS FASTA

3009 bp · LXL04_036519|LXL04_036519|OH1004|CDS

ATGTCCGGTCGCCATGAAAAGGGCGTCAATGTTCAGGTCCTTCTTCGGTGCAGGCCTTTTAGTGACGATGAGTTAAGGAACAACGCCCCTCAGGTTGTAACGTGTAATGAGTACCAGAGAGAAGTTGCGGTTTCACAGAGTATTGCTGGGAAGCAAATCGATAGGGTTTTCACGTTTGACAAGGTTTTTGGACCTACCGCCCACCAAAAAGATCTATATGAACAAGCAATCACTCCTATCGTGAATGAAGTTCTAGAAGG...

Protein

Download Protein FASTA

1002 aa · LXL04_036519|LXL04_036519|OH1004|PROTEIN

MSGRHEKGVNVQVLLRCRPFSDDELRNNAPQVVTCNEYQREVAVSQSIAGKQIDRVFTFDKVFGPTAHQKDLYEQAITPIVNEVLEGFNCTIFAYGQTGTGKTYTMEGECKRSKSGPDGELPSHAGLIPRAVKQIFDTLEHQKAEYSVKVTFLELYNEEITDLLAVEEITKVIEDKQKKLLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEANPEGDELIKCGKLNL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036519`
TK1151 ID	TkA04G038950
OH-1004 ID	LXL04_036519
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036519

Location Chr08:43825498-43830498 (+)

Description Similar to KIN5C: Kinesin-like protein KIN-5C

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g36200`	Responsible for microtubule translocation.	No verified direct reference in this release
`At3g45850`	Responsible for microtubule translocation.	No verified direct reference in this release
`At2g28620`	Responsible for microtubule translocation.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0558400`	Responsible for microtubule translocation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036519 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000281 mitotic cytokinesis Biological Process

GO:0000911 cytokinesis by cell plate formation Biological Process

GO:0007018 microtubule-based movement Biological Process

GO:0007052 mitotic spindle organization Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0043622 cortical microtubule organization Biological Process

GO:0051231 spindle elongation Biological Process

GO:0090307 mitotic spindle assembly Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005819 spindle Cellular Component

GO:0005874 microtubule Cellular Component

GO:0005876 spindle microtubule Cellular Component

KEGG gene cross-reference

ath:AT2G28620

ath:AT2G36200

nta:107774014

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.758

Rank 1 · LXL04_036519 · OH-1004

Nucleus0.210

Rank 2 · LXL04_036519 · OH-1004

Cell membrane0.071

Rank 3 · LXL04_036519 · OH-1004

Golgi apparatus0.060

Rank 4 · LXL04_036519 · OH-1004

Mitochondrion0.058

Rank 5 · LXL04_036519 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16796.12Microtub_bd10-164 aa

PF00225.30Kinesin16-356 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036519	`PF16796.12`	Microtub_bd	10	164	1.1e-25	91.1
LXL04_036519	`PF00225.30`	Kinesin	16	356	7.4e-115	384.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P82266`	Arabidopsis thaliana	Kinesin-like protein KIN-5C	67.426%	Swiss-Prot	strong database homology
`Q9LZU5`	Arabidopsis thaliana	Kinesin-like protein KIN-5D	47.760%	Swiss-Prot	moderate database homology
`F4IIS5`	Arabidopsis thaliana	Kinesin-like protein KIN-5A	45.887%	Swiss-Prot	moderate database homology
`B7EJ91`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-5C	62.066%	Swiss-Prot	strong database homology

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