LXL04_036502 | RubberDandelionOmics

Gene overview

LXL04_036502

Reference: OH-1004 Chr: Chr08 Coordinates: 43518576-43520087 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

741 bp · LXL04_036502|LXL04_036502|OH1004|cDNA

ATGGGGAAGTCGTATCCAACTGTAAGTGACGAATACTTGAAAGTTATCGATGAAGTGAGGAGTAAGCTTCGAGACTTGTTCTCTGAGAAGAGTTGTGCTCCATTGATGCTAAGAATGGCATTCCATTCTGCCGGGACTTTTGATATGAACTCAAAAACCGGAGGTCCATTCGGTACCTTGAGGCATAAAGCCGAACAAGCTCATGGTCCAAATGTCGGACTTCACATTGCTATCGATTTATTGGAGCCAATTAAGCAGCA...

CDS

Download CDS FASTA

741 bp · LXL04_036502|LXL04_036502|OH1004|CDS

ATGGGGAAGTCGTATCCAACTGTAAGTGACGAATACTTGAAAGTTATCGATGAAGTGAGGAGTAAGCTTCGAGACTTGTTCTCTGAGAAGAGTTGTGCTCCATTGATGCTAAGAATGGCATTCCATTCTGCCGGGACTTTTGATATGAACTCAAAAACCGGAGGTCCATTCGGTACCTTGAGGCATAAAGCCGAACAAGCTCATGGTCCAAATGTCGGACTTCACATTGCTATCGATTTATTGGAGCCAATTAAGCAGCA...

Protein

Download Protein FASTA

246 aa · LXL04_036502|LXL04_036502|OH1004|PROTEIN

MGKSYPTVSDEYLKVIDEVRSKLRDLFSEKSCAPLMLRMAFHSAGTFDMNSKTGGPFGTLRHKAEQAHGPNVGLHIAIDLLEPIKQQFPIISYADFYMLAGIVAVEVTGGPNIPFHPGRQDKDEPAAEGRLPLPNHGTEHLRTIFVNTMGLNDQDIVALSGAHTLGSCHRDRSGMDGSWTKNPLTFDNSYFKELLAGEKEGLVQLSTDKALLADPVLRPLVEKFAADQDAFFAAYAESFAKLSELG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036502`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036502

Location Chr08:43518576-43520087 (+)

Description Similar to APX1: L-ascorbate peroxidase 1, cytosolic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g07890`	Plays a key role in hydrogen peroxide removal.	Cytosolic ascorbate peroxidase 1 is a central component of the reactive oxygen gene network of Arabidopsis.2005 · DOI: 10.1105/tpc.104.026971

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0694700`	Plays a key role in hydrogen peroxide removal.	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses.2013 · DOI: 10.1371/journal.pone.0057472
`Os03g0285700`	Plays a key role in hydrogen peroxide removal.	No verified direct reference in this release
`UniProt: A2XFC7`	Plays a key role in hydrogen peroxide removal.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036502 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000302 response to reactive oxygen species Biological Process

GO:0009408 response to heat Biological Process

GO:0009699 phenylpropanoid biosynthetic process Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0009809 lignin biosynthetic process Biological Process

GO:0034599 cellular response to oxidative stress Biological Process

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G07890

dosa:Os03g0285700

dosa:Os07g0694700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.778

Rank 1 · LXL04_036502 · OH-1004

Nucleus0.293

Rank 2 · LXL04_036502 · OH-1004

Mitochondrion0.114

Rank 3 · LXL04_036502 · OH-1004

Peroxisome0.075

Rank 4 · LXL04_036502 · OH-1004

Cell membrane0.047

Rank 5 · LXL04_036502 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00141.29peroxidase19-227 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036502	`PF00141.29`	peroxidase	19	227	8.4e-48	163.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q05431`	Arabidopsis thaliana	L-ascorbate peroxidase 1, cytosolic	69.106%	Swiss-Prot	strong database homology
`Q9FE01`	Oryza sativa subsp. japonica	L-ascorbate peroxidase 2, cytosolic	68.443%	Swiss-Prot	strong database homology
`Q10N21`	Oryza sativa subsp. japonica	L-ascorbate peroxidase 1, cytosolic	65.447%	Swiss-Prot	strong database homology
`A2XFC7`	Oryza sativa subsp. indica	L-ascorbate peroxidase 1, cytosolic	65.041%	Swiss-Prot	strong database homology

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